CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007961.1-P	Field mustard	cytosol	99.23	99.23
CDY09514	Canola	cytosol	98.07	98.07
AT1G71100.1	Thale cress	cytosol	84.56	82.02
CDY37370	Canola	cytosol	71.43	69.29
CDY40387	Canola	cytosol	71.04	68.91
VIT_01s0011g04630.t01	Wine grape	cytosol	69.5	66.91
KRG90972	Soybean	cytosol	68.34	66.79
KRH35797	Soybean	cytosol, mitochondrion	67.95	66.17
PGSC0003DMT400015282	Potato	cytosol	67.57	65.79
PGSC0003DMT400078358	Potato	cytosol, plastid	67.95	65.67
CDX77814	Canola	cytosol	66.8	65.04
Solyc05g008370.1.1	Tomato	cytosol	67.18	64.93
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	50.97	62.56
CDY17683	Canola	cytosol	68.34	61.67
GSMUA_Achr4P11200_001	Banana	cytosol	58.3	58.98
VIT_06s0004g03340.t01	Wine grape	plastid	67.95	57.89
GSMUA_Achr4P06520_001	Banana	cytosol	56.76	56.76
GSMUA_Achr4P03710_001	Banana	plastid	56.37	55.94
CDY21110	Canola	plastid	56.76	53.45
CDY30018	Canola	plastid	56.76	53.26
EES09254	Sorghum	cytosol	53.28	53.08
CDY41900	Canola	plastid	55.98	52.73
CDY50757	Canola	plastid	55.6	52.17
TraesCS2D01G271700.1	Wheat	cytosol	51.35	51.95
OQU79375	Sorghum	cytosol	27.03	50.72
Os04t0306400-01	Rice	cytosol	51.35	48.36
HORVU2Hr1G066480.1	Barley	plastid	35.14	44.61
Zm00001d052482_P001	Maize	cytosol	15.06	36.79
CDY49016	Canola	plastid	26.64	24.38
Zm00001d030701_P001	Maize	extracellular	52.51	23.45
CDY49497	Canola	plastid	25.1	22.18
CDY66019	Canola	cytosol	8.88	20.91
CDY29709	Canola	cytosol	8.88	20.91
CDY10254	Canola	cytosol	8.88	20.91
CDY06683	Canola	cytosol	8.88	20.91
CDX96931	Canola	cytosol	8.88	20.91
CDY21109	Canola	cytosol	14.67	14.56

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:3.9.2.1
GO:A0A078ERM9	EnsemblPlants:CDY03702	ProteinID:CDY03702	ProteinID:CDY03702.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00116503001	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2
MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445
TIGRFAMs:TIGR00021	UniPathway:UPA00115	UniParc:UPI0004EDD5CB	:	:	:

Description

BnaA02g15350D

Coordinates

chrLK031945:-:635431..636210

Molecular Weight (calculated)

27256.0 Da

IEP (calculated)

6.045

GRAVY (calculated)

0.064

Length

259 amino acids

Sequence
(BLAST)

001: MGSASNPLVT SSVVDDSPLP SNLTQDDLKK LAAYKAVEYV KSGMVVGLGT GSTAKHAVAR ISELLRQGKL RDIIGIPTST TTHEQAVSLG IPLSDLDSHP
101: VVDLSIDGAD EVDPALNLVK GRGGSLLREK MVEGASKKFV VIVDESKLVK HIGGSGLAVP VEVVPFCCDF TRGKLEELFR EAGCKAKLRV KSGGEAAAVT
201: DNGNYVVDLY LERDMGDLEA ASEKILRLPG VVEHGMFLGI ATTLIVAGKS GVTVKDRFG

Best Arabidopsis Sequence Match ( AT1G71100.1 )
(BLAST)

001: MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL
101: DSHPVVDLSI DGADEVDPAL NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE ELFRDSGCVA KLRMKIGSNG
201: EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV EHGMFLGMAT TLIVAGKFGV TVKDRFG

Arabidopsis Description

RPI1Probable ribose-5-phosphate isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.