Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06683 | Canola | cytosol | 100.0 | 100.0 |
| CDY10254 | Canola | cytosol | 100.0 | 100.0 |
| CDX96931 | Canola | cytosol | 99.09 | 99.09 |
| CDY66019 | Canola | cytosol | 99.09 | 99.09 |
| TraesCS7D01G377100.1 | Wheat | cytosol | 98.18 | 98.18 |
| TraesCS7B01G282700.1 | Wheat | cytosol | 98.18 | 98.18 |
| TraesCS7A01G380700.1 | Wheat | cytosol | 98.18 | 98.18 |
| TraesCS2D01G492300.1 | Wheat | cytosol | 98.18 | 98.18 |
| TraesCS2B01G520200.1 | Wheat | cytosol | 98.18 | 98.18 |
| TraesCS2A01G492100.1 | Wheat | cytosol | 98.18 | 98.18 |
| KRH30286 | Soybean | cytosol, nucleus | 98.18 | 98.18 |
| HORVU7Hr1G090790.1 | Barley | cytosol | 98.18 | 98.18 |
| HORVU2Hr1G109760.1 | Barley | cytosol | 98.18 | 98.18 |
| EES13034 | Sorghum | cytosol | 98.18 | 98.18 |
| EER98053 | Sorghum | cytosol | 98.18 | 98.18 |
| CDX77814 | Canola | cytosol | 22.73 | 9.4 |
| CDY09514 | Canola | cytosol | 20.91 | 8.88 |
| CDY03702 | Canola | cytosol | 20.91 | 8.88 |
| CDY37370 | Canola | cytosol | 20.91 | 8.61 |
| CDY40387 | Canola | cytosol | 20.0 | 8.24 |
| CDY17683 | Canola | cytosol | 20.91 | 8.01 |
| CDY50757 | Canola | plastid | 14.55 | 5.8 |
| CDY41900 | Canola | plastid | 13.64 | 5.45 |
| CDY21110 | Canola | plastid | 13.64 | 5.45 |
| CDY30018 | Canola | plastid | 13.64 | 5.43 |
| CDY49016 | Canola | plastid | 13.64 | 5.3 |
| CDY49497 | Canola | plastid | 13.64 | 5.12 |
| CDY21109 | Canola | cytosol | 10.0 | 4.21 |
Protein Annotations
| EnsemblPlants:CDY29709 | EnsemblPlantsGene:GSBRNA2T00043491001 | InterPro:PHF5 | PANTHER:PTHR13120 | PANTHER:PTHR13120:SF1 | PFAM:PF03660 |
| PIRSF:PIRSF016468 | ProteinID:CDY10254.1 | ProteinID:CDY29709 | ProteinID:CDY29709.1 | UniParc:UPI000254441C | UniProt:A0A078GX23 |
| MapMan:16.4.1.2.5 | : | : | : | : | : |
Description
BnaA04g17180DBnaA04g17180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX23]
Coordinates
chrLK032241:+:478281..479359
Molecular Weight (calculated)
12415.2 Da
IEP (calculated)
8.485
GRAVY (calculated)
-0.435
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VVCDSYVRPC TLVRICDECN YGSFQGRCVI CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY
101: ERKKYGFKKR
101: ERKKYGFKKR
001: MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSFQGRCVI CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY
101: ERKKYGFKKR
101: ERKKYGFKKR
Arabidopsis Description
PHD finger-like domain-containing protein 5A [Source:UniProtKB/Swiss-Prot;Acc:P0DI19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.