CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90972	Soybean	cytosol	95.86	96.23
VIT_01s0011g04630.t01	Wine grape	cytosol	80.83	79.93
PGSC0003DMT400015282	Potato	cytosol	75.19	75.19
Solyc05g008370.1.1	Tomato	cytosol	74.81	74.25
PGSC0003DMT400078358	Potato	cytosol, plastid	74.06	73.51
VIT_06s0004g03340.t01	Wine grape	plastid	80.45	70.39
AT2G01290.1	Thale cress	cytosol	69.17	69.43
Bra014328.1-P	Field mustard	cytosol	69.55	69.29
CDY37370	Canola	cytosol	69.55	69.29
CDY40387	Canola	cytosol	69.55	69.29
CDY09514	Canola	cytosol	67.29	69.11
CDX77814	Canola	cytosol	68.05	68.05
Bra007961.1-P	Field mustard	cytosol	66.17	67.95
CDY03702	Canola	cytosol	66.17	67.95
AT1G71100.1	Thale cress	cytosol	67.67	67.42
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	49.62	62.56
CDY17683	Canola	cytosol	67.29	62.37
GSMUA_Achr4P06520_001	Banana	cytosol	60.15	61.78
GSMUA_Achr4P11200_001	Banana	cytosol	58.65	60.94
GSMUA_Achr4P03710_001	Banana	plastid	57.52	58.62
Bra024892.1-P	Field mustard	cytosol	59.02	58.58
KRH68720	Soybean	nucleus, plastid	59.02	55.87
EES09254	Sorghum	cytosol	54.51	55.77
KRG96958	Soybean	plastid	57.14	54.09
TraesCS2D01G271700.1	Wheat	cytosol	51.5	53.52
OQU79375	Sorghum	cytosol	27.07	52.17
Os04t0306400-01	Rice	cytosol	53.01	51.27
KRH44502	Soybean	plastid	31.2	45.11
HORVU2Hr1G066480.1	Barley	plastid	34.59	45.1
Zm00001d052482_P001	Maize	cytosol	16.54	41.51
Zm00001d030701_P001	Maize	extracellular	55.64	25.52
KRH11874	Soybean	plastid	27.07	24.74
KRH30286	Soybean	cytosol, nucleus	9.02	21.82
KRG98270	Soybean	cytosol	9.02	21.82
KRH36898	Soybean	cytosol	7.89	20.79

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	EntrezGene:100790894	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	UniProt:A0A0R0I6J5	EMBL:ACUP02006703	EnsemblPlantsGene:GLYMA_10G265400	GO:GO:0003674	GO:GO:0003824
GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987
EnsemblPlants:KRH35797	ProteinID:KRH35797	ProteinID:KRH35797.1	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
PANTHER:PTHR43748	PANTHER:PTHR43748:SF2	MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr
SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI0001BA8432	:	:

Description

hypothetical protein

Coordinates

chr10:+:48921268..48922795

Molecular Weight (calculated)

28672.9 Da

IEP (calculated)

5.400

GRAVY (calculated)

0.117

Length

266 amino acids

Sequence
(BLAST)

001: MAIPYPHFIA TEKAAMDAGL LHPSSPSVIL TQDDLKKIAA YKAVEYVESG MVLGLGTGST AKHAVDRIGE LLRQGKLKDI VGIPTSTKTH EQALSLGIPL
101: SDLDAHPAID LAIDGADEVD PFLNLVKGRG GSLLREKMVE GACKKFIVIV DESKLVNYLG GSGLAMPVEV IKFCWRFTAA RLQKLFEEAG CVARLRTFGE
201: KEKEEPYVTD NGNFIVDLYF ERSIGDLKAA SDAILQLAGV VEHGMFLDMA TTVIVAGELG LTVKNK

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.