Factsheet for PGSC0003DMT400015282

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078358	Potato	cytosol, plastid	83.46	82.84
VIT_01s0011g04630.t01	Wine grape	cytosol	78.2	77.32
KRH35797	Soybean	cytosol, mitochondrion	75.19	75.19
KRG90972	Soybean	cytosol	74.81	75.09
CDY09514	Canola	cytosol	66.17	67.95
Bra007961.1-P	Field mustard	cytosol	65.79	67.57
CDY03702	Canola	cytosol	65.79	67.57
AT2G01290.1	Thale cress	cytosol	67.29	67.55
VIT_06s0004g03340.t01	Wine grape	plastid	77.07	67.43
CDY37370	Canola	cytosol	66.92	66.67
CDY40387	Canola	cytosol	66.54	66.29
Bra014328.1-P	Field mustard	cytosol	66.54	66.29
CDX77814	Canola	cytosol	66.17	66.17
AT1G71100.1	Thale cress	cytosol	65.04	64.79
GSMUA_Achr3P29130_001	Banana	cytosol, mitochondrion	49.25	62.09
CDY17683	Canola	cytosol	65.41	60.63
GSMUA_Achr4P11200_001	Banana	cytosol	58.27	60.55
GSMUA_Achr4P06520_001	Banana	cytosol	58.27	59.85
GSMUA_Achr4P03710_001	Banana	plastid	56.77	57.85
Bra024892.1-P	Field mustard	cytosol	57.52	57.09
EES09254	Sorghum	cytosol	52.63	53.85
PGSC0003DMT400050076	Potato	cytosol, plastid	57.89	52.74
TraesCS2D01G271700.1	Wheat	cytosol	49.25	51.17
OQU79375	Sorghum	cytosol	26.32	50.72
Os04t0306400-01	Rice	cytosol	52.26	50.55
Zm00001d052482_P001	Maize	cytosol	17.67	44.34
HORVU2Hr1G066480.1	Barley	plastid	33.83	44.12
Zm00001d030701_P001	Maize	extracellular	52.63	24.14
PGSC0003DMT400054453	Potato	plastid	25.56	20.99

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	EntrezGene:102581814	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	UniProt:M1A5R9	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like
PFAM:PF06026	EnsemblPlantsGene:PGSC0003DMG400005961	PGSC:PGSC0003DMG400005961	EnsemblPlants:PGSC0003DMT400015282	PANTHER:PTHR43748	PANTHER:PTHR43748:SF2
InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI00029666D5
RefSeq:XP_006360418.1	:	:	:	:	:

Description

Ribose-5-phosphate isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400005961]

Coordinates

chr4:-:2037020..2038272

Molecular Weight (calculated)

28802.4 Da

IEP (calculated)

6.254

GRAVY (calculated)

0.216

Length

266 amino acids

Sequence
(BLAST)

001: MAIAYPHFFG SEKAKNLKPS FMVTPTPSPV ILSQDELKKI AAYKAVEFVE SGMVLGLGTG STAKHAVDRI AELLRIGKLK NIVGIPTSSI THEQAVSLGI
101: PLSDLNAHPI LDLAIDGADE VDPQMNLVKG RGGSLLREKM VETASKKFIV IVDESKLVSH LGGTGLAMPV EIVPFCWEFT LRRLEMLFIE AGCVGKLRVV
201: RESSEPYVTD NGNYIIDLYF KSDMGDLKEA SDAILRLAGV VEHGMFLDMA TTVIVAGKLG VFVTNK

Best Arabidopsis Sequence Match ( AT2G01290.1 )
(BLAST)

001: MALAYDPLFI TSDKSLSAFD VASSPPQPMN LTQDELKRIA AYKAVEFVES GMVLGLGTGS TAKHAVDRIG ELLRQGKLEN IVGIPTSKKT QEQALSLGIP
101: LSDLDAHPVI DLSIDGADEV DPFLNLVKGR GGSLLREKMI EGASKKFVVI VDDSKMVKHI GGSKLALPVE IVPFCWKFTA EKLRSLLEGY GCEANLRLGE
201: KGKAFVTDNG NYIVDMHVEE DMGDLGAVSD AILRLPGVVE HGMFLDMAST VIIAGELGVK IKNKH

Arabidopsis Description

RPI2Probable ribose-5-phosphate isomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.