Factsheet for PGSC0003DMT400054453

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069620.2.1	Tomato	plastid	71.3	78.04
VIT_10s0092g00090.t01	Wine grape	cytosol	45.68	64.63
GSMUA_Achr9P10110_001	Banana	mitochondrion	42.59	59.48
KRH11874	Soybean	plastid	50.0	55.67
KRH36898	Soybean	cytosol	17.28	55.45
CDY49016	Canola	plastid	43.21	49.47
Bra033747.1-P	Field mustard	plastid	41.67	47.7
CDY49497	Canola	plastid	42.9	47.44
TraesCS5B01G419300.1	Wheat	plastid	42.28	46.13
KXG37436	Sorghum	plastid	41.36	45.73
TraesCS5A01G417000.1	Wheat	plastid	41.67	45.45
Os03t0781400-01	Rice	plastid	41.67	45.15
TraesCS5D01G424700.1	Wheat	plastid	41.36	44.82
Zm00001d013135_P002	Maize	plastid	41.98	42.37
AT5G44520.2	Thale cress	cytosol, plastid	41.67	41.41
PGSC0003DMT400015282	Potato	cytosol	20.99	25.56
PGSC0003DMT400078358	Potato	cytosol, plastid	20.99	25.37
PGSC0003DMT400050076	Potato	cytosol, plastid	20.06	22.26

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	EntrezGene:102580638	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	UniProt:M1BWC8	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026
EnsemblPlantsGene:PGSC0003DMG400021135	PGSC:PGSC0003DMG400021135	EnsemblPlants:PGSC0003DMT400054453	PANTHER:PTHR43748	PANTHER:PTHR43748:SF1	InterPro:Ribose5P_isomerase_typA
SUPFAM:SSF100950	UniParc:UPI000295D0B8	SEG:seg	:	:	:

Description

Ribose 5-phosphate isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400021135]

Coordinates

chr2:-:28727807..28730099

Molecular Weight (calculated)

35470.1 Da

IEP (calculated)

5.216

GRAVY (calculated)

0.147

Length

324 amino acids

Sequence
(BLAST)

001: MRNMAMAMAL PSSKSPFISS SSSTKKQAYN FTSSRKSLHR FVTRSTLSDD LFLAAKHTVD SYVKNGMVVG LGSGHASTLA IQYLGQKLRA GTIKDVTAIP
101: TCVSSASEAA KAGIPLEQYD DSFKIDLAFD EADIMEEETL AAIVGRRKLQ GDDSIIKEKT ILEAADQLIF IIKEKQFKGG VEGSIPVLIK SVNWLETAEE
201: IDDLFLGDAE VWRRPAIGYA GPLGGDFPLV TKEGHNILDV IFTSPMESLG ISPSLNYFFA TLLLNLFDAN CLPPIVRMTV EVAKILDQID GVVEHGVIFR
301: KPLVLQSLQS IFMFLLSLCL THEM

Best Arabidopsis Sequence Match ( AT5G44520.2 )
(BLAST)

001: MHHKTDREIR AVKTTESRLS DSNRSSHTKK MVTATASTPF SLSSSVVFTR RRNFKRFPVC ASLSPEVSPL LRAAHHTVDN YVKSGMIIGL GSGEASDFAI
101: RYLGQQLGSG SLHNVVGVPM SARSASEAAK YGIPLEYYRD GVQIDFAFHD ADAVEENTLI AVIGRRRSSQ EDDYILKQKS IVKVADEAVF MIKEEQYKAG
201: LEGSIPVLVQ SLNWLAIAEE IDDLYLGDAE VWRRASVENE GPLGGDFPIV TSDGHNILDV IFTTPIRSLA DLATSLDKID GVVDHGLIIK TRCTVVIAEE
301: TVVRSVTLQT SALEGGVRTY GQTLQK

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT5G44520]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.