Factsheet for Solyc02g069620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054453	Potato	plastid	78.04	71.3
VIT_10s0092g00090.t01	Wine grape	cytosol	52.03	67.25
GSMUA_Achr9P10110_001	Banana	mitochondrion	50.0	63.79
KRH36898	Soybean	cytosol	21.28	62.38
KRH11874	Soybean	plastid	57.77	58.76
CDY49016	Canola	plastid	48.99	51.24
Bra033747.1-P	Field mustard	plastid	48.65	50.88
CDY49497	Canola	plastid	49.66	50.17
TraesCS5A01G417000.1	Wheat	plastid	46.96	46.8
KXG37436	Sorghum	plastid	45.95	46.42
TraesCS5B01G419300.1	Wheat	plastid	45.95	45.79
Os03t0781400-01	Rice	plastid	45.95	45.48
TraesCS5D01G424700.1	Wheat	plastid	45.61	45.15
AT5G44520.2	Thale cress	cytosol, plastid	48.99	44.48
Zm00001d013135_P002	Maize	plastid	45.61	42.06
Solyc05g008370.1.1	Tomato	cytosol	22.64	25.0
Solyc01g097460.2.1	Tomato	plastid	23.65	23.89
Solyc04g047740.1.1	Tomato	cytosol	8.45	16.78

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.30.70.260	Gene3D:3.40.50.1360	MapMan:35.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	UniProt:K4B7U4	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748
PANTHER:PTHR43748:SF1	InterPro:Ribose5P_isomerase_typA	SUPFAM:SSF100950	SUPFAM:SSF75445	EnsemblPlantsGene:Solyc02g069620.2	EnsemblPlants:Solyc02g069620.2.1
UniParc:UPI0002768295	:	:	:	:	:

Description

Probable ribose-5-phosphate isomerase 4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G44520) UniProtKB/Swiss-Prot;Acc:Q9FI13]

Coordinates

chr2:-:39457826..39460398

Molecular Weight (calculated)

32193.6 Da

IEP (calculated)

4.621

GRAVY (calculated)

0.051

Length

296 amino acids

Sequence
(BLAST)

001: MSNMAMAMAL PSSTSPFLFS CTTQKQAHNF TSSRKPLHRF VTRSTLSDDL FLAAKHTVDS YVKNGMVVGL GSGHASTLAI QYLGQKLRAG TIKDVTAIPT
101: CVSSASEAAK AGIPLEQYDD SLKIDLAFDE ADIMEEETLA AIIGRRKLQG DDSIIKEKTI LEAADQLIFI IKEKQFKGGV EGSVPVLIKS VNWLETAEEI
201: DDLFLGDAEV WRRPAIGYAG PLGGDFPLVT KEGHNILDVI FTSPIESLVE VAKILDQIDG VVEHGVIFRK PCTAIIASEN DLQIVDNTFL MESSNF

Best Arabidopsis Sequence Match ( AT5G44520.2 )
(BLAST)

001: MHHKTDREIR AVKTTESRLS DSNRSSHTKK MVTATASTPF SLSSSVVFTR RRNFKRFPVC ASLSPEVSPL LRAAHHTVDN YVKSGMIIGL GSGEASDFAI
101: RYLGQQLGSG SLHNVVGVPM SARSASEAAK YGIPLEYYRD GVQIDFAFHD ADAVEENTLI AVIGRRRSSQ EDDYILKQKS IVKVADEAVF MIKEEQYKAG
201: LEGSIPVLVQ SLNWLAIAEE IDDLYLGDAE VWRRASVENE GPLGGDFPIV TSDGHNILDV IFTTPIRSLA DLATSLDKID GVVDHGLIIK TRCTVVIAEE
301: TVVRSVTLQT SALEGGVRTY GQTLQK

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT5G44520]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.