CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11500
KRH36517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	KRH11500	AT4G22240.1	24937144
AT3G04790.1	KRH36517	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96958	Soybean	plastid	78.8	51.6
KRH68720	Soybean	nucleus, plastid	73.91	48.4
VIT_14s0030g01900.t01	Wine grape	plastid	60.33	39.22
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	45.11	38.97
Bra040406.1-P	Field mustard	plastid	54.35	36.23
CDY50757	Canola	plastid	54.35	36.23
TraesCS6D01G061600.2	Wheat	plastid	54.35	36.23
TraesCS6B01G084400.1	Wheat	golgi	53.8	36.13
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	53.26	36.03
CDY41900	Canola	plastid	53.8	36.0
Bra040120.1-P	Field mustard	plastid	53.26	35.64
CDY21110	Canola	plastid	53.26	35.64
AT3G04790.1	Thale cress	plastid	53.26	35.51
Os07t0176900-01	Rice	plastid	53.8	35.36
PGSC0003DMT400050076	Potato	cytosol, plastid	55.98	35.27
Solyc01g097460.2.1	Tomato	plastid	55.98	35.15
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	53.26	35.13
CDY30018	Canola	plastid	51.63	34.42
KXG34505	Sorghum	plastid	54.35	32.79
KRG90972	Soybean	cytosol	45.65	31.7
KRH35797	Soybean	cytosol, mitochondrion	45.11	31.2
TraesCS6A01G063200.1	Wheat	plastid	49.46	30.33
Zm00001d018936_P001	Maize	cytosol, extracellular	53.26	24.2
GSMUA_Achr8P03140_001	Banana	plasma membrane	50.54	17.68
KRH11874	Soybean	plastid	24.46	15.46
Solyc04g047740.1.1	Tomato	cytosol	7.61	9.4
KRH30286	Soybean	cytosol, nucleus	4.89	8.18
KRG98270	Soybean	cytosol	4.89	8.18
KRH36898	Soybean	cytosol	1.09	1.98

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	Gene3D:3.40.50.1360	MapMan:35.1	EMBL:ACUP02004930
EnsemblPlantsGene:GLYMA_08G214700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009987	UniProt:K7L7Z2	EnsemblPlants:KRH44502	ProteinID:KRH44502
ProteinID:KRH44502.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	MetaCyc:PWY-1861
MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	SUPFAM:SSF100950	UniParc:UPI000295615A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:17365730..17366613

Molecular Weight (calculated)

19441.8 Da

IEP (calculated)

7.632

GRAVY (calculated)

0.272

Length

184 amino acids

Sequence
(BLAST)

001: MASIFLSSPP SFSSAHHNAS THLILHTPNS LNLRTMSHSL PIRAITLTWD YLKRLAANKA VEFVKRGMVL DPGTGTGSTA TFVIAKLGTL LASGQLIDIV
101: GVPTSKRTED KVLFLGIPLF VLGLTIDDAD EVDPNLNLIK GCGGALVCKK MVEAASNKFV TDKDDTKLVD GLGGSGLAMP VEVV

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.