Factsheet for Os07t0176900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 23159799
plastid: 27126603

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 27126603 doi

Y Wang, K Ji, S Shen, H Chen

Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0133600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	Os09t0133600-01	AT4G22240.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	69.64	91.55
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	82.5	84.93
TraesCS6D01G061600.2	Wheat	plastid	82.5	83.7
TraesCS6B01G084400.1	Wheat	golgi	81.79	83.58
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	83.21	83.51
KXG34505	Sorghum	plastid	82.86	76.07
KRH68720	Soybean	nucleus, plastid	73.57	73.31
VIT_14s0030g01900.t01	Wine grape	plastid	73.21	72.44
KRG96958	Soybean	plastid	71.43	71.17
TraesCS6A01G063200.1	Wheat	plastid	75.0	70.0
AT3G04790.1	Thale cress	plastid	67.5	68.48
CDY21110	Canola	plastid	66.43	67.64
Bra040120.1-P	Field mustard	plastid	66.07	67.27
PGSC0003DMT400050076	Potato	cytosol, plastid	70.0	67.12
CDY30018	Canola	plastid	66.07	67.03
Solyc01g097460.2.1	Tomato	plastid	70.0	66.89
CDY50757	Canola	plastid	65.71	66.67
Bra040406.1-P	Field mustard	plastid	65.71	66.67
CDY41900	Canola	plastid	65.36	66.55
KRH44502	Soybean	plastid	35.36	53.8
Zm00001d018936_P001	Maize	cytosol, extracellular	76.79	53.09
Os04t0306400-01	Rice	cytosol	45.36	46.18
GSMUA_Achr8P03140_001	Banana	plasma membrane	72.5	38.59
Solyc04g047740.1.1	Tomato	cytosol	18.93	35.57
Os03t0781400-01	Rice	plastid	26.43	24.75

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	EntrezGene:4342543	EMBL:AK060861	ProteinID:BAC83439.1	ProteinID:BAF20937.1	ProteinID:BAT00292.1
ProteinID:EAZ38881.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016853	GO:GO:0042742	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	EnsemblPlantsGene:Os07g0176900
EnsemblPlants:Os07t0176900-01	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	UniProt:Q6ZEZ2	InterPro:Ribose5P_isomerase_typA
InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI00001BF31D	RefSeq:XP_015647995.1
SEG:seg	:	:	:	:	:

Description

Similar to Ribose-5-phosphate isomerase precursor (EC 5.3.1.6). (Os07t0176900-01);Similar to ribose-5-phosphate isomerase. (Os07t0176900-02)

Coordinates

chr7:-:4068004..4070134

Molecular Weight (calculated)

29199.1 Da

IEP (calculated)

5.427

GRAVY (calculated)

0.113

Length

280 amino acids

Sequence
(BLAST)

001: MAAATVSVRF HPAASAARCG GGSRRSRRLS GVIRAQSAPA SAAAAALTQD DLKRLAAVRA VEQVESGMVL GLGTGSTAAF AVAEIGALLA SGKLSGIVGV
101: PTSKRTFEQA QSLGIPLSTL DDHPRIDLAI DGADEVDPDL NLVKGRGGAL LREKMVEAAS DKFIVVVDET KLVTGLGGSG LAMPVEVVQF CWKYNQVRLQ
201: DLFNDEGCEA KLRLDEGGKP YVTDNSNYIV DLYFKTPIKD ALAAGKEISA LEGVVEHGLF LDMATSVIIA GTDGVSVKTK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.