Factsheet for Bra040406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013602.1-P
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	Bra013602.1-P	AT4G22240.1	24937144
AT3G04790.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50757	Canola	plastid	100.0	100.0
CDY41900	Canola	plastid	93.12	93.45
Bra040120.1-P	Field mustard	plastid	89.13	89.45
AT3G04790.1	Thale cress	plastid	82.61	82.61
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	59.06	76.53
KRH68720	Soybean	nucleus, plastid	67.39	66.19
Os07t0176900-01	Rice	plastid	66.67	65.71
VIT_14s0030g01900.t01	Wine grape	plastid	67.03	65.37
TraesCS6D01G061600.2	Wheat	plastid	64.86	64.86
KRG96958	Soybean	plastid	65.94	64.77
TraesCS6B01G084400.1	Wheat	golgi	64.13	64.6
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	63.41	64.34
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	63.77	63.08
PGSC0003DMT400050076	Potato	cytosol, plastid	66.3	62.67
Solyc01g097460.2.1	Tomato	plastid	66.3	62.46
KXG34505	Sorghum	plastid	64.86	58.69
Bra007961.1-P	Field mustard	cytosol	52.17	55.6
KRH44502	Soybean	plastid	36.23	54.35
TraesCS6A01G063200.1	Wheat	plastid	58.33	53.67
Bra014328.1-P	Field mustard	cytosol	51.45	53.18
Bra024892.1-P	Field mustard	cytosol	44.93	46.27
Zm00001d018936_P001	Maize	cytosol, extracellular	61.96	42.22
GSMUA_Achr8P03140_001	Banana	plasma membrane	63.04	33.08
Solyc04g047740.1.1	Tomato	cytosol	17.39	32.21
Bra033747.1-P	Field mustard	plastid	23.55	22.97

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	EnsemblPlantsGene:Bra040406	EnsemblPlants:Bra040406.1	EnsemblPlants:Bra040406.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004751	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009987
UniProt:M4FH28	HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3
InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	SUPFAM:SSF100950	SUPFAM:SSF75445	TIGRFAMs:TIGR00021	UniParc:UPI000253ECA0
SEG:seg	:	:	:	:	:

Description

AT3G04790 (E=2e-127) | ribose 5-phosphate isomerase-related

Coordinates

chrScaffold000203:+:55813..56643

Molecular Weight (calculated)

29398.6 Da

IEP (calculated)

6.531

GRAVY (calculated)

0.059

Length

276 amino acids

Sequence
(BLAST)

001: MASLSFVSSS HLTLRAPSPN NLRSSSPRPT SVSFSVKAQS VALSQDDLKK LAAEKAVESI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGQL HDIVGIPTSK
101: RTEDQARSLG IPLVALDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVAERFI VVADDTKLVK GLGGSGLAMP VEVVQFCWKF NLVRLRDLFK
201: EFGCEAKLRV GEGGEAYVTD NSNFIIDLYF KEPLKDGFAA GREIGKFEGV VEHGLFLGMA TSVIIAGKNG VEVMNK

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.