CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12270
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04790.1	EES12270	AT4G22240.1	24937144
AT3G04790.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10620_001	Banana	cytosol, extracellular	60.0	85.92
TraesCS2A01G234900.1	Wheat	mitochondrion, plastid	75.41	84.56
TraesCS6B01G084400.1	Wheat	golgi	74.75	83.21
Os07t0176900-01	Rice	plastid	76.07	82.86
TraesCS2D01G238600.2	Wheat	mitochondrion, plastid	75.41	82.44
TraesCS6D01G061600.2	Wheat	plastid	74.43	82.25
KRH68720	Soybean	nucleus, plastid	67.21	72.95
KRG96958	Soybean	plastid	66.56	72.24
VIT_14s0030g01900.t01	Wine grape	plastid	65.9	71.02
TraesCS6A01G063200.1	Wheat	plastid	65.57	66.67
CDY21110	Canola	plastid	59.67	66.18
Bra040120.1-P	Field mustard	plastid	59.34	65.82
PGSC0003DMT400050076	Potato	cytosol, plastid	62.95	65.75
AT3G04790.1	Thale cress	plastid	59.34	65.58
Solyc01g097460.2.1	Tomato	plastid	62.95	65.53
CDY41900	Canola	plastid	59.02	65.45
CDY30018	Canola	plastid	59.02	65.22
CDY50757	Canola	plastid	58.69	64.86
Bra040406.1-P	Field mustard	plastid	58.69	64.86
Zm00001d018936_P001	Maize	cytosol, extracellular	75.41	56.79
KRH44502	Soybean	plastid	32.79	54.35
EES09254	Sorghum	cytosol	41.31	48.46
OQU79375	Sorghum	cytosol	18.03	39.86
Solyc04g047740.1.1	Tomato	cytosol	18.36	37.58
GSMUA_Achr8P03140_001	Banana	plasma membrane	61.64	35.74
KXG37436	Sorghum	plastid	22.95	23.89
EES13034	Sorghum	cytosol	4.92	13.64
EER98053	Sorghum	cytosol	4.92	13.64

Protein Annotations

KEGG:00030+5.3.1.6	KEGG:00051+5.3.1.6	KEGG:00710+5.3.1.6	MapMan:1.2.9	Gene3D:3.30.70.260	Gene3D:3.40.50.1360
MapMan:3.9.2.1	UniProt:A0A1B6Q9A0	GO:GO:0003674	GO:GO:0003824	GO:GO:0004751	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0042742	EnsemblPlants:KXG34505	ProteinID:KXG34505	ProteinID:KXG34505.1
HAMAP:MF_00170	InterPro:NagB/RpiA_transferase-like	PFAM:PF06026	PANTHER:PTHR43748	PANTHER:PTHR43748:SF3	MetaCyc:PWY-1861
MetaCyc:PWY-5723	InterPro:Ribose5P_isomerase_typA	InterPro:Ribose5P_isomerase_typA_subgr	EnsemblPlantsGene:SORBI_3002G051100	SUPFAM:SSF100950	SUPFAM:SSF75445
TIGRFAMs:TIGR00021	UniParc:UPI000220703E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4844658..4847585

Molecular Weight (calculated)

32543.1 Da

IEP (calculated)

7.165

GRAVY (calculated)

0.010

Length

305 amino acids

Sequence
(BLAST)

001: MAATAISVRL HPTAARHVAS SSARRARLGT VRAQSAPAAA AALTQDDLKR LAAVRAVEQV QSGMVLGLGT GSTAAFAVAE IGALLAAGKL EKIVGVPTSK
101: RTFEQAQSLG IPLSTLDDHP SIDLAIDGAD EVDPDLNLVK GRGGALLREK MVEAASAKFI VVVDETKLVD GLGGSGLAMP VEVVQFCWKY NLVRLQELFK
201: EEGVEAKLRF EGDKPYVTDN SNYIVDLYFK TPIKDALAAG QEIAALEGVV DHGLFLNMAS SVIIAGTDGV SVKTKAARDS SEPVFYRRYV QYKSRTELKD
301: HKHQL

Best Arabidopsis Sequence Match ( AT3G04790.1 )
(BLAST)

001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

Arabidopsis Description

RPI3EMB3119 [Source:UniProtKB/TrEMBL;Acc:A0A178V804]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.