Factsheet for GSMUA_Achr9P03520_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33940_001	Banana	cytosol	99.68	98.71
EES00543	Sorghum	cytosol	94.81	95.11
Zm00001d040334_P001	Maize	cytosol	94.81	95.11
Os01t0267200-01	Rice	plasma membrane, plastid	94.81	95.11
Os05t0371200-01	Rice	cytosol	94.81	95.11
Zm00001d008284_P004	Maize	cytosol	94.81	95.11
TraesCS1D01G235300.1	Wheat	cytosol	94.48	94.48
TraesCS3A01G183700.1	Wheat	cytosol	94.16	94.46
TraesCS3B01G213500.1	Wheat	cytosol	94.16	94.46
TraesCS3D01G187900.1	Wheat	cytosol	94.16	94.46
TraesCS1A01G237100.2	Wheat	cytosol	89.94	89.07
Zm00001d035432_P001	Maize	peroxisome	45.45	86.96
Zm00001d052648_P001	Maize	cytosol, nucleus, peroxisome	40.26	85.52
HORVU1Hr1G058180.1	Barley	plastid	94.16	82.62
HORVU3Hr1G037790.1	Barley	nucleus, plastid	94.16	80.11
Zm00001d013752_P001	Maize	cytosol	62.34	50.13
GSMUA_Achr10P...	Banana	cytosol	28.57	23.91

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0061578	GO:GO:0070536	EnsemblPlantsGene:GSMUA_Achr9G03520_001	EnsemblPlants:GSMUA_Achr9P03520_001	EnsemblPlants:GSMUA_Achr9T03520_001	InterPro:IPR037518
InterPro:JAMM/MPN+_dom	UniProt:M0TX61	InterPro:MPN	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249
InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712
UniParc:UPI0002965FC0	SEG:seg	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 14 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03520_001]

Coordinates

chr9:+:2420779..2425349

Molecular Weight (calculated)

34505.9 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.224

Length

308 amino acids

Sequence
(BLAST)

001: MERLHRIFSG AGGMGHPPPD SPQLDSAEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNPRAI AVVVDPIQSV KGKVVIDAFR LINPQTMMLG QEPRQTTSNV GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLIL RPFDTHSKTN EQTVQEMLDL AIKYNKAVQE EDELPPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIIQTLG
301: TMLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.