Factsheet for Os01t0267200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00543	Sorghum	cytosol	99.67	99.67
Zm00001d008284_P004	Maize	cytosol	99.67	99.67
Zm00001d040334_P001	Maize	cytosol	99.67	99.67
Os05t0371200-01	Rice	cytosol	99.35	99.35
TraesCS3A01G183700.1	Wheat	cytosol	97.72	97.72
TraesCS3B01G213500.1	Wheat	cytosol	97.72	97.72
TraesCS3D01G187900.1	Wheat	cytosol	97.72	97.72
GSMUA_Achr9P03520_001	Banana	unclear	95.11	94.81
GSMUA_Achr6P33940_001	Banana	cytosol	95.44	94.21
Zm00001d035432_P001	Maize	peroxisome	47.23	90.06
Zm00001d052648_P001	Maize	cytosol, nucleus, peroxisome	41.69	88.28
HORVU3Hr1G037790.1	Barley	nucleus, plastid	97.72	82.87
Os06t0703600-01	Rice	cytosol	63.52	63.31
Zm00001d013752_P001	Maize	cytosol	63.52	50.91
Os04t0654700-02	Rice	cytosol	28.99	24.72

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	EntrezGene:4324379	EntrezGene:4338586	ProteinID:AAV31238.1	EMBL:AB037152
EMBL:AK099455	EMBL:AK109403	EMBL:AK111763	EMBL:AK112020	ProteinID:BAA88535.1	ProteinID:BAF04597.1
ProteinID:BAF17269.1	ProteinID:BAS71473.1	ProteinID:BAS93687.1	ProteinID:EAZ11356.1	ProteinID:EEE63484.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0061578	GO:GO:0070536	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN
EnsemblPlantsGene:Os01g0267200	EnsemblPlants:Os01t0267200-01	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	InterPro:PSMD14
PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	UniProt:Q9SDD1	InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712
UniParc:UPI00000A9D21	RefSeq:XP_015622144.1	RefSeq:XP_015637397.1	SEG:seg	:	:

Description

19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 11Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11). (Os01t0267200-01)

Coordinates

chr1:+:9166370..9169867

Molecular Weight (calculated)

34340.7 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.211

Length

307 amino acids

Sequence
(BLAST)

001: MERLQRIFGA SGMGQPPTDS PLLDSSEQVY ISSLALLKML KHGRAGVPME VMGLMLGEFV DDYTVRVVDV FAMPQSGTGV SVEAVDHVFQ TNMLDMLKQT
101: GRPEMVVGWY HSHPGFGCWL SGVDINTQQS FEALNPRAVA VVIDPIQSVK GKVVIDAFRL INPQTMMLGQ EPRQTTSNVG HLNKPSIQAL IHGLNRHYYS
201: IAINYRKNEL EEKMLLNLHK KKWTDGLILK SFDTHSKTNE QTVQEMLNLA IKYNKAVQEE DELPPEKLAI ANVGRQDAKK HLEEHVSNLM SSNIVQTLGT
301: MLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.