Factsheet for Zm00001d052648_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035432_P001	Maize	peroxisome	73.79	66.46
EES00543	Sorghum	cytosol	88.97	42.02
Zm00001d008284_P004	Maize	cytosol	88.97	42.02
Zm00001d040334_P001	Maize	cytosol	88.97	42.02
Os01t0267200-01	Rice	plasma membrane, plastid	88.28	41.69
TraesCS3A01G183700.1	Wheat	cytosol	85.52	40.39
TraesCS3B01G213500.1	Wheat	cytosol	85.52	40.39
TraesCS3D01G187900.1	Wheat	cytosol	85.52	40.39
GSMUA_Achr9P03520_001	Banana	unclear	85.52	40.26
GSMUA_Achr6P33940_001	Banana	cytosol	85.52	39.87
HORVU3Hr1G037790.1	Barley	nucleus, plastid	85.52	34.25
Zm00001d013752_P001	Maize	cytosol	84.83	32.11
Zm00001d002027_P002	Maize	extracellular	15.86	6.35

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	UniProt:A0A1D6QI81	ProteinID:AQK57569.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0061578	GO:GO:0070536	PFAM:PF13012	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13
InterPro:Rpn11/EIF3F_C	UniParc:UPI00084388B1	EnsemblPlantsGene:Zm00001d052648	EnsemblPlants:Zm00001d052648_P001	EnsemblPlants:Zm00001d052648_T001	SEG:seg

Description

MADS-transcription factor 52Putative MADS-box transcription factor family protein

Coordinates

chr4:-:195797119..195798103

Molecular Weight (calculated)

16701.0 Da

IEP (calculated)

8.876

GRAVY (calculated)

-0.718

Length

145 amino acids

Sequence
(BLAST)

001: MMLGQEPRQT TSNVGHLNKP SIQALIHGLN RHYYSIAINY RKNELEEKML LNLHKKKWTD GLILKRFDTH SKTNEQTVQE MLNLAIKYNK AVQEEDELPP
101: EKLAIANVGR QDAKKHLEEH VSNLMSSNNV DTTIGWNALI NSFSH

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.