Factsheet for TraesCS3A01G183700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

cytosol: 22729884
plasma membrane: 22729884

golgi: 25769308

gfp PMID: 22729884 doi

MJ Hong, DY Kim, SY Kang, DS Kim, JB Kim, YW Seo

Division of Biotechnology, Korea University, Anam-Dong, Seongbuk-Gu, Seoul 136-701, Republic of Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G213500.1	Wheat	cytosol	100.0	100.0
TraesCS3D01G187900.1	Wheat	cytosol	100.0	100.0
EES00543	Sorghum	cytosol	97.72	97.72
Os01t0267200-01	Rice	plasma membrane, plastid	97.72	97.72
Zm00001d008284_P004	Maize	cytosol	97.72	97.72
Zm00001d040334_P001	Maize	cytosol	97.72	97.72
GSMUA_Achr9P03520_001	Banana	unclear	94.46	94.16
GSMUA_Achr6P33940_001	Banana	cytosol	94.46	93.25
TraesCS1A01G237100.2	Wheat	cytosol	93.16	91.96
Zm00001d035432_P001	Maize	peroxisome	45.93	87.58
Zm00001d052648_P001	Maize	cytosol, nucleus, peroxisome	40.39	85.52
HORVU3Hr1G037790.1	Barley	nucleus, plastid	100.0	84.81
TraesCS7A01G416000.1	Wheat	cytosol	64.5	64.08
Zm00001d013752_P001	Maize	cytosol	62.22	49.87
TraesCS2A01G504600.1	Wheat	cytosol	29.32	24.73

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0061578	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	PFAM:PF01398	PFAM:PF13012
PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232
SUPFAM:SSF102712	EnsemblPlantsGene:TraesCS3A01G183700	EnsemblPlants:TraesCS3A01G183700.1	TIGR:cd08069	SEG:seg	:

Description

No Description!

Coordinates

chr3A:+:213129283..213132800

Molecular Weight (calculated)

34271.5 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.200

Length

307 amino acids

Sequence
(BLAST)

001: MERLQRIFGA GGMGQPPSDS PLLDSSEQVY ISSLALLKML KHGRAGVPME VMGLMLGEFV DDYTVRVVDV FAMPQSGTGV SVEAVDHVFQ TNMLDMLKQT
101: GRPEMVVGWY HSHPGFGCWL SGVDINTQQS FEALNPRAVA VVIDPIQSVK GKVVIDAFRL INPQTMMLGQ EPRQTTSNVG HLNKPSIQAL IHGLNRHYYS
201: IAINYRKNEL EEKMLLNLHK KKWTDGLILK KFDAHSETNE QTVQEMLSLA IKYNKAVQEE DELSPEKLAI ANVGRQDAKK HLEEHVSNLM SSNIVQTLGT
301: MLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.