Factsheet for Os05t0371200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0267200-01	Rice	plasma membrane, plastid	99.35	99.35
TraesCS1D01G235300.1	Wheat	cytosol	98.37	98.05
GSMUA_Achr9P03520_001	Banana	unclear	95.11	94.81
GSMUA_Achr6P33940_001	Banana	cytosol	95.11	93.89
TraesCS1A01G237100.2	Wheat	cytosol	93.49	92.28
HORVU1Hr1G058180.1	Barley	plastid	97.72	85.47
Os06t0703600-01	Rice	cytosol	63.84	63.64
Os04t0654700-02	Rice	cytosol	28.99	24.72

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	EntrezGene:4338586	ProteinID:AAV31238.1	EMBL:AK109403	EMBL:AK111763
EMBL:AK112020	ProteinID:BAF17269.1	ProteinID:BAS93687.1	ProteinID:EEE63484.1	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0061578	GO:GO:0070536	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	EnsemblPlantsGene:Os05g0371200
EnsemblPlants:Os05t0371200-01	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410
PANTHER:PTHR10410:SF13	UniProt:Q60EW3	InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712	UniParc:UPI00004503BB
RefSeq:XP_015637397.1	SEG:seg	:	:	:	:

Description

Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11). (Os05t0371200-01)

Coordinates

chr5:+:17870104..17873680

Molecular Weight (calculated)

34395.7 Da

IEP (calculated)

6.748

GRAVY (calculated)

-0.224

Length

307 amino acids

Sequence
(BLAST)

001: MERLQRIFGA SGMGQPPSDS PLLDSSEQVY ISSLALLKML KHGRAGVPME VMGLMLGEFV DDYTVRVVDV FAMPQSGTGV SVEAVDHVFQ TNMLDMLKQT
101: GRPEMVVGWY HSHPGFGCWL SGVDINTQQS FEALNPRAVA VVIDPIQSVK GKVVIDAFRL INPQTMMLGQ EPRQTTSNVG HLNKPSIQAL IHGLNRHYYS
201: IAINYRKNEL EEKMLLNLHK KKWTDGLILK RFDTHSKTNE QTVQEMLNLA IKYNKAVQEE DELPPEKLAI ANVGRQDAKK HLEEHVSNLM SSNIVQTLGT
301: MLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.