Factsheet for GSMUA_Achr4P08970_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09790_001	Banana	cytosol	58.15	57.84
CDX87302	Canola	cytosol	10.87	51.95
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	51.63	50.53
Solyc03g119910.2.1	Tomato	cytosol	48.64	50.42
PGSC0003DMT400014555	Potato	cytosol	48.37	50.0
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	48.37	49.86
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	47.83	48.22
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	47.01	46.26
KRH09799	Soybean	cytosol, nucleus, peroxisome	44.29	46.18
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	46.47	45.97
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	44.29	45.92
KRH23520	Soybean	cytosol	43.75	45.74
VIT_09s0002g05300.t01	Wine grape	cytosol	43.75	44.85
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	43.21	44.41
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	42.93	44.13
CDY68965	Canola	cytosol, nucleus, peroxisome	42.93	44.13
CDY39663	Canola	cytosol, nucleus, peroxisome	42.93	44.01
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	42.66	43.73
CDX81720	Canola	cytosol, nucleus, peroxisome	42.39	43.58
CDY36572	Canola	cytosol, nucleus, peroxisome	42.39	43.45
KRH44397	Soybean	cytosol	43.75	42.93
CDY38661	Canola	cytosol, nucleus, peroxisome	41.3	42.46
CDY37589	Canola	cytosol, nucleus, peroxisome	41.3	42.46
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	41.3	42.46
CDY39986	Canola	cytosol	14.4	42.4
AT1G80340.1	Thale cress	cytosol	39.95	42.36
KRH61843	Soybean	cytosol, peroxisome, plastid	39.13	42.23
KRH47509	Soybean	cytosol	43.21	42.06
KRH16040	Soybean	cytosol	38.86	41.21
KRH05073	Soybean	cytosol	39.13	41.14
Solyc01g058250.1.1	Tomato	cytosol	38.86	41.09
KRH52518	Soybean	cytosol	38.59	40.92
Bra020909.1-P	Field mustard	cytosol	38.86	40.86
Zm00001d039634_P001	Maize	cytosol	42.39	40.84
Bra008481.1-P	Field mustard	cytosol	38.59	40.46
CDY37588	Canola	cytosol, nucleus, peroxisome	38.59	40.46
CDY38660	Canola	cytosol	38.59	40.46
CDY31424	Canola	cytosol	38.32	40.29
AT1G80330.1	Thale cress	cytosol	38.86	40.28
PGSC0003DMT400074744	Potato	cytosol	38.04	40.11
PGSC0003DMT400059595	Potato	cytosol	38.04	40.11
CDX76441	Canola	cytosol	38.04	40.0
Solyc05g052740.1.1	Tomato	cytosol	37.77	39.83
AT4G21690.1	Thale cress	cytosol	37.77	39.83
TraesCS3D01G124500.1	Wheat	cytosol	39.95	39.73
TraesCS3B01G141800.1	Wheat	cytosol	39.67	39.57
CDX87303	Canola	cytosol	18.75	39.43
HORVU3Hr1G022840.8	Barley	cytosol	40.22	39.36
PGSC0003DMT400086139	Potato	cytosol	37.23	39.26
Os01t0177400-01	Rice	golgi	39.4	39.19
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	39.4	39.19
TraesCS3A01G122600.1	Wheat	cytosol	39.4	39.19
EES00202	Sorghum	cytosol, peroxisome, plastid	41.03	38.82
TraesCS2B01G570900.1	Wheat	cytosol	38.59	37.87
TraesCS2D01G542100.1	Wheat	cytosol	37.77	37.27
Zm00001d037627_P001	Maize	cytosol	36.96	36.36
HORVU2Hr1G118350.1	Barley	cytosol	36.68	35.81
KXG21453	Sorghum	cytosol, peroxisome, plastid	39.67	35.52
TraesCS2B01G570800.2	Wheat	cytosol	39.4	35.45
Os05t0178100-01	Rice	plasma membrane	36.41	35.17
PGSC0003DMT400044153	Potato	nucleus	27.72	34.69
Os04t0517600-00	Rice	cytosol, peroxisome	13.86	24.88

Protein Annotations

MapMan:11.6.1.6	Gene3D:2.60.120.330	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G08970_001
EnsemblPlants:GSMUA_Achr4P08970_001	EnsemblPlants:GSMUA_Achr4T08970_001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M0SMB4
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF95
SUPFAM:SSF51197	UniParc:UPI000294CE15	SEG:seg	:	:	:

Description

Putative Gibberellin 3-beta-dioxygenase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G08970_001]

Coordinates

chr4:+:6533960..6536897

Molecular Weight (calculated)

40438.4 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.262

Length

368 amino acids

Sequence
(BLAST)

001: MSCSPSEPQQ HLELESVREV PDSHAWPALD DHPTVYEPVP VVDLAGPDAS VAHLARVCES WGAFQVTGHG IRSDLLERLE SETRRLFALP MDQKLKAARP
101: SNGISGYGLA RISCFFSKLM WSEGFTISGS PLDHALKLWP DADPSRFCDV MQEYSDEMKQ VAGRVVRLML LSMGLTPEEM KRAEEGTRVD QLSAVLQLNS
201: YPPCPDPNRA MGLAAHTDSS LVTLLFQSGT SGLQLLRPQD QHGPARWVTV PPRPGALIVL AGDLLQILTN GRYKSVAHRA VVNRNHHRVS VAYICGPPPH
301: HKLSPVGKPA SPAPCLAYRA VSWADYLGLK AELFDKALAS IMVAEDSRGD EGICYSCRSP RRKDLSHR

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.