Factsheet for PGSC0003DMT400044153

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059595	Potato	cytosol	79.25	66.76
PGSC0003DMT400086139	Potato	cytosol	75.51	63.61
PGSC0003DMT400074744	Potato	cytosol	67.69	57.02
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	44.22	36.62
KRH61843	Soybean	cytosol, peroxisome, plastid	41.16	35.48
KRH16040	Soybean	cytosol	40.82	34.58
KRH05073	Soybean	cytosol	41.16	34.57
KRH52518	Soybean	cytosol	40.14	34.01
PGSC0003DMT400014555	Potato	cytosol	36.73	30.34
GSMUA_Achr5P09790_001	Banana	cytosol	37.07	29.46
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	37.07	29.3
CDY31424	Canola	cytosol	34.69	29.14
CDX76441	Canola	cytosol	34.01	28.57
Bra020909.1-P	Field mustard	cytosol	34.01	28.57
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	36.39	28.46
AT4G21690.1	Thale cress	cytosol	33.67	28.37
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	34.69	27.72
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	32.99	27.17
Zm00001d039634_P001	Maize	cytosol	33.67	25.92
TraesCS3B01G141800.1	Wheat	cytosol	32.31	25.75
Os01t0177400-01	Rice	golgi	32.31	25.68
TraesCS3A01G122600.1	Wheat	cytosol	32.31	25.68
TraesCS3D01G124500.1	Wheat	cytosol	31.63	25.14
HORVU3Hr1G022840.8	Barley	cytosol	31.63	24.73
EES00202	Sorghum	cytosol, peroxisome, plastid	32.65	24.68
TraesCS2D01G542100.1	Wheat	cytosol	30.61	24.13
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.59	23.51
TraesCS2B01G570900.1	Wheat	cytosol	29.93	23.47
HORVU2Hr1G118350.1	Barley	cytosol	29.25	22.81
Zm00001d037627_P001	Maize	cytosol	28.91	22.73
Os05t0178100-01	Rice	plasma membrane	28.57	22.05
TraesCS2B01G570800.2	Wheat	cytosol	29.93	21.52
KXG21453	Sorghum	cytosol, peroxisome, plastid	28.91	20.68
Os04t0517600-00	Rice	cytosol, peroxisome	7.48	10.73

Protein Annotations

EnsemblPlants:PGSC0003DMT400044153	EnsemblPlantsGene:PGSC0003DMG400017140	Gene3D:2.60.120.330	InterPro:DIOX_N	InterPro:IPNS-like	InterPro:IPR027443
PANTHER:PTHR10209	PANTHER:PTHR10209:SF197	PFAM:PF14226	PGSC:PGSC0003DMG400017140	SUPFAM:SSF51197	UniParc:UPI0002959D77
UniProt:M1BFP4	MapMan:50.1.13	:	:	:	:

Description

Gibberellin 3-oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400017140]

Coordinates

chr00:-:33942555..33944962

Molecular Weight (calculated)

33016.9 Da

IEP (calculated)

6.999

GRAVY (calculated)

-0.483

Length

294 amino acids

Sequence
(BLAST)

001: MATTSTLEES FKENPQSLQH ILPIDFHSIQ EVPNSHLWPN INNSPISHDE KNPNVPIIDL LAPNVVELIG HACKTWGIFQ VVNHGVSLEL FDEVESQARR
101: IFALPAEQKV KVVRSTSGAT GYGTARITPF FSKFMWHEGF TIMDSPLDHA KELWPHDYQN FCDVMENYQK KMKALSFQLW LLILNYLQPY SQEHSIKSFE
201: STGALQLNSY PCCPNPNHAL GLAPHTDSLF LTTPSNKQHK GSSNLEKRPV SAELRKPGQG FAWGQQWSPS AGSAQGVGSG RDNYNPRITN YKSS

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.