Factsheet for PGSC0003DMT400086139

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052740.1.1	Tomato	cytosol	93.98	93.98
PGSC0003DMT400059595	Potato	cytosol	88.83	88.83
PGSC0003DMT400074744	Potato	cytosol	83.95	83.95
PGSC0003DMT400044153	Potato	nucleus	63.61	75.51
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	52.44	51.55
KRH05073	Soybean	cytosol	47.28	47.14
KRH61843	Soybean	cytosol, peroxisome, plastid	45.27	46.33
KRH16040	Soybean	cytosol	45.85	46.11
KRH52518	Soybean	cytosol	44.7	44.96
PGSC0003DMT400014555	Potato	cytosol	43.55	42.7
CDY31424	Canola	cytosol	41.83	41.71
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	44.13	41.4
Bra020909.1-P	Field mustard	cytosol	41.26	41.14
CDX76441	Canola	cytosol	40.97	40.86
AT4G21690.1	Thale cress	cytosol	40.69	40.69
GSMUA_Achr5P09790_001	Banana	cytosol	41.55	39.19
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	42.12	39.1
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	39.26	37.23
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	37.54	36.69
Os01t0177400-01	Rice	golgi	34.96	32.97
Zm00001d039634_P001	Maize	cytosol	35.53	32.46
TraesCS3B01G141800.1	Wheat	cytosol	34.1	32.25
TraesCS3A01G122600.1	Wheat	cytosol	34.1	32.16
TraesCS3D01G124500.1	Wheat	cytosol	33.52	31.62
EES00202	Sorghum	cytosol, peroxisome, plastid	35.24	31.62
HORVU3Hr1G022840.8	Barley	cytosol	33.81	31.38
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	32.38	30.54
Zm00001d037627_P001	Maize	cytosol	32.66	30.48
TraesCS2B01G570900.1	Wheat	cytosol	32.09	29.87
TraesCS2D01G542100.1	Wheat	cytosol	31.81	29.76
Os05t0178100-01	Rice	plasma membrane	32.38	29.66
HORVU2Hr1G118350.1	Barley	cytosol	30.95	28.65
KXG21453	Sorghum	cytosol, peroxisome, plastid	31.81	27.01
TraesCS2B01G570800.2	Wheat	cytosol	31.23	26.65
Os04t0517600-00	Rice	cytosol, peroxisome	10.6	18.05

Protein Annotations

EntrezGene:102585743	MapMan:11.6.1.6	Gene3D:2.60.120.330	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1DB24	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400035710	PGSC:PGSC0003DMG400035710	EnsemblPlants:PGSC0003DMT400086139	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF197	SUPFAM:SSF51197	UniParc:UPI00029639E9	RefSeq:XP_006355748.1	SEG:seg	:

Description

Gibberellin 3beta-hydroxylase3 [Source:PGSC_GENE;Acc:PGSC0003DMG400035710]

Coordinates

chr5:-:48003198..48004516

Molecular Weight (calculated)

39715.8 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.149

Length

349 amino acids

Sequence
(BLAST)

001: MATSALEESF KENPQSLQHI LPIDFHLIQE VPNSHLWPNI NNSPINHDEK NPNVPIIDLL APNVVELIGH ACRTLGIFQV VNHGVPLEFF DEAESQARRL
101: FALPAEQKVK VVRSTSGATG YGTARITPFF SKFMWHEGFT IMDSPLDHAK ELWPHDYQEF CDVMENYQKK MKALSFQLWL LILNYLQPSQ EHLINSFEFT
201: QALQLNSYPC CPNPNHALGL APHTDSLFLT ILHQTNNTKG LQILKKDQGW TSIAPISNDA LIVNVGDLLH ILSNGEFPSV YHRVLVDQTK HRVSLAYFFG
301: PQVDSTIVPL VSFEKNVGVV VPKYRKVKVK EYLSLKAKHL EKVFSLIRY

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.