CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039634_P001	Maize	cytosol	86.63	88.22
HORVU3Hr1G022840.8	Barley	cytosol	75.32	77.93
TraesCS3A01G122600.1	Wheat	cytosol	74.04	77.84
TraesCS3D01G124500.1	Wheat	cytosol	73.78	77.57
TraesCS3B01G141800.1	Wheat	cytosol	73.26	77.24
Os01t0177400-01	Rice	golgi	72.75	76.49
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	61.18	64.32
TraesCS2B01G570900.1	Wheat	cytosol	60.67	62.93
TraesCS2D01G542100.1	Wheat	cytosol	58.35	60.86
HORVU2Hr1G118350.1	Barley	cytosol	58.87	60.74
TraesCS2B01G570800.2	Wheat	cytosol	62.72	59.66
CDX87302	Canola	cytosol	10.28	51.95
KXG21453	Sorghum	cytosol, peroxisome, plastid	51.16	48.42
GSMUA_Achr5P09790_001	Banana	cytosol	41.65	43.78
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	40.36	41.76
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	37.53	41.13
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	38.82	41.03
CDY39986	Canola	cytosol	13.11	40.8
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	37.28	40.62
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	37.02	39.45
PGSC0003DMT400014555	Potato	cytosol	35.99	39.33
VIT_09s0002g05300.t01	Wine grape	cytosol	35.99	39.0
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	37.28	38.98
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	37.02	38.5
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	35.48	38.44
Solyc03g119910.2.1	Tomato	cytosol	34.96	38.31
KRH09799	Soybean	cytosol, nucleus, peroxisome	34.7	38.24
CDY36572	Canola	cytosol, nucleus, peroxisome	35.22	38.16
CDY39663	Canola	cytosol, nucleus, peroxisome	35.22	38.16
KRH23520	Soybean	cytosol	34.45	38.07
CDY68965	Canola	cytosol, nucleus, peroxisome	34.96	37.99
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	34.96	37.99
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	34.96	37.99
CDX81720	Canola	cytosol, nucleus, peroxisome	34.7	37.71
KRH61843	Soybean	cytosol, peroxisome, plastid	32.9	37.54
AT1G80340.1	Thale cress	cytosol	33.16	37.18
CDY37589	Canola	cytosol, nucleus, peroxisome	34.19	37.15
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	33.93	36.87
CDY38661	Canola	cytosol, nucleus, peroxisome	33.93	36.87
PGSC0003DMT400059595	Potato	cytosol	32.39	36.1
KRH52518	Soybean	cytosol	32.13	36.02
KRH05073	Soybean	cytosol	32.39	36.0
Bra008481.1-P	Field mustard	cytosol	32.39	35.9
CDY37588	Canola	cytosol, nucleus, peroxisome	32.39	35.9
PGSC0003DMT400086139	Potato	cytosol	31.62	35.24
KRH44397	Soybean	cytosol	33.93	35.2
KRH16040	Soybean	cytosol	31.36	35.16
Bra020909.1-P	Field mustard	cytosol	31.62	35.14
CDY38660	Canola	cytosol	31.62	35.04
PGSC0003DMT400074744	Potato	cytosol	31.36	34.96
KRH47509	Soybean	cytosol	33.93	34.92
CDY31424	Canola	cytosol	31.36	34.86
AT4G21690.1	Thale cress	cytosol	31.11	34.67
CDX76441	Canola	cytosol	31.11	34.57
Solyc05g052740.1.1	Tomato	cytosol	30.85	34.38
Solyc01g058250.1.1	Tomato	cytosol	30.33	33.91
AT1G80330.1	Thale cress	cytosol	30.85	33.8
PGSC0003DMT400044153	Potato	nucleus	24.68	32.65
CDX87303	Canola	cytosol	13.37	29.71

Protein Annotations

MapMan:11.6.1.6	Gene3D:2.60.120.330	EntrezGene:8078789	UniProt:C5XMS7	InterPro:DIOX_N	EnsemblPlants:EES00202
ProteinID:EES00202	ProteinID:EES00202.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416
GO:GO:0009628	GO:GO:0009686	GO:GO:0009719	GO:GO:0009740	GO:GO:0009987	GO:GO:0016491
GO:GO:0016707	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF245
EnsemblPlantsGene:SORBI_3003G045900	SUPFAM:SSF51197	unigene:Sbi.11008	UniParc:UPI0001A8452E	RefSeq:XP_002455082.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:4212218..4214432

Molecular Weight (calculated)

42125.5 Da

IEP (calculated)

6.927

GRAVY (calculated)

-0.035

Length

389 amino acids

Sequence
(BLAST)

001: MPTPSHLANP RYFDFRAARR VPETHAWPGL HDHPVVDGGA PGPDAVPVVD LAGAADEPRA AVVAQVARAA EQWGAFLLTG HGVPAELLAR VEDRIATMFA
101: LPADDKMRAV RGPGDACGYG SPPISSFFSK CMWSEGYTFS PANLRADLRK LWPKAGDDYT SFCDVMEEFH KHMRALADKL LELFLMALGL TDEQVGGVEA
201: ERRIAETMTA TMHLNWYPRC PDPRRALGLI AHTDSGFFTF VLQSLVPGLQ LFRHAPDRWV AVPAVPGAFV VNVGDLFHIL TNGRFHSVYH RAVVNRDLDR
301: ISLGYFLGPP PHAKVAPLRE AVPPGRTPAY RAVTWPEYMG VRKKAFTTGA SALKMVALAA AAAAADLDDD AGAGAAAEPV VHQQLLVSS

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.