Factsheet for Bra026122.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36572	Canola	cytosol, nucleus, peroxisome	99.72	99.72
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	87.74	87.99
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	86.35	86.59
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	69.64	69.83
KRH23520	Soybean	cytosol	56.82	57.95
KRH09799	Soybean	cytosol, nucleus, peroxisome	56.55	57.51
Solyc03g119910.2.1	Tomato	cytosol	56.27	56.9
PGSC0003DMT400014555	Potato	cytosol	55.99	56.46
KRH44397	Soybean	cytosol	58.77	56.27
Bra008481.1-P	Field mustard	cytosol	54.6	55.84
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	56.27	55.34
KRH47509	Soybean	cytosol	57.38	54.5
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	54.87	52.67
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	53.48	51.61
VIT_09s0002g05300.t01	Wine grape	cytosol	51.25	51.25
GSMUA_Achr5P09790_001	Banana	cytosol	48.19	46.76
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	47.35	45.21
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	43.18	43.42
Bra020909.1-P	Field mustard	cytosol	41.78	42.86
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	43.73	42.66
TraesCS3A01G122600.1	Wheat	cytosol	38.72	37.57
Os01t0177400-01	Rice	golgi	38.16	37.03
TraesCS3D01G124500.1	Wheat	cytosol	37.88	36.76
HORVU3Hr1G022840.8	Barley	cytosol	38.16	36.44
TraesCS3B01G141800.1	Wheat	cytosol	37.33	36.31
Zm00001d039634_P001	Maize	cytosol	38.44	36.13
EES00202	Sorghum	cytosol, peroxisome, plastid	38.44	35.48
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	35.65	34.59
HORVU2Hr1G118350.1	Barley	cytosol	35.65	33.95
TraesCS2B01G570900.1	Wheat	cytosol	35.1	33.6
TraesCS2D01G542100.1	Wheat	cytosol	34.54	33.24
Os05t0178100-01	Rice	plasma membrane	34.54	32.55
TraesCS2B01G570800.2	Wheat	cytosol	35.65	31.3
Zm00001d037627_P001	Maize	cytosol	32.03	30.75
KXG21453	Sorghum	cytosol, peroxisome, plastid	32.87	28.71
Os04t0517600-00	Rice	cytosol, peroxisome	13.37	23.41

Protein Annotations

MapMan:11.6.1.6	Gene3D:2.60.120.330	ProteinID:AAO22518	ProteinID:AAO22518.1	EMBL:AY176674	EnsemblPlantsGene:Bra026122
EnsemblPlants:Bra026122.1	EnsemblPlants:Bra026122.1-P	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M4EBG3	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF95	SUPFAM:SSF51197	UniParc:UPI000253F0AC
SEG:seg	:	:	:	:	:

Description

AT1G15550 (E=5e-182) GA4, ATGA3OX1, GA3OX1 | GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding

Coordinates

chrA06:-:5969817..5971266

Molecular Weight (calculated)

40009.5 Da

IEP (calculated)

6.268

GRAVY (calculated)

-0.232

Length

359 amino acids

Sequence
(BLAST)

001: MPTMLTDVFR GHPIHLPHSH QPDFTSLSEL PDSYTWTPKD DPLLDAAPSP PAASENIPLI DLNHPDAANQ IGSACRTWGA FQIANHGVPL ELLQGIEFLT
101: GSLFQLPVQR KLKAARSETG FSGYGVARIS SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNNYCDIVEE YEEQMQKLAS KLMWLSLTSL GVSEEDIKWA
201: SANPDLNWAQ SALQLNHYPV CPEPDRAMGL AAHTDSTLLT ILHQNNTAGL QVFRDDLGWV TVPPVPGSLV VNVGDLFHIL SNGLFKSVLH RARVNQTRSR
301: LSVAFLWGPQ SDIKISPVPK LVSPVGSPLY RSVTWTEYLR TKATHFNEAL SMIKNDIDE

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.