Factsheet for Solyc03g119910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014555	Potato	cytosol	91.55	91.29
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	75.77	71.93
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	68.73	66.85
CDX87302	Canola	cytosol	13.8	63.64
KRH09799	Soybean	cytosol, nucleus, peroxisome	62.25	62.61
KRH23520	Soybean	cytosol	61.69	62.22
KRH44397	Soybean	cytosol	61.13	57.87
KRH47509	Soybean	cytosol	60.56	56.88
CDY39986	Canola	cytosol	20.0	56.8
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	56.9	56.27
CDY39663	Canola	cytosol, nucleus, peroxisome	56.9	56.27
CDY36572	Canola	cytosol, nucleus, peroxisome	56.62	55.99
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	56.34	55.87
CDY68965	Canola	cytosol, nucleus, peroxisome	56.34	55.87
VIT_09s0002g05300.t01	Wine grape	cytosol	56.06	55.43
CDX81720	Canola	cytosol, nucleus, peroxisome	55.77	55.31
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	55.21	54.75
AT1G80340.1	Thale cress	cytosol	52.68	53.89
CDY37589	Canola	cytosol, nucleus, peroxisome	52.96	52.51
CDY38661	Canola	cytosol, nucleus, peroxisome	52.96	52.51
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	52.68	52.23
Bra008481.1-P	Field mustard	cytosol	51.55	52.14
CDY38660	Canola	cytosol	51.27	51.85
CDY37588	Canola	cytosol, nucleus, peroxisome	51.27	51.85
AT1G80330.1	Thale cress	cytosol	51.83	51.83
GSMUA_Achr5P09790_001	Banana	cytosol	52.11	50.0
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	50.42	48.64
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	50.42	47.61
Solyc01g058250.1.1	Tomato	cytosol	45.35	46.26
CDX87303	Canola	cytosol	21.97	44.57
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	44.23	43.98
Solyc05g052740.1.1	Tomato	cytosol	43.1	43.84
Os01t0177400-01	Rice	golgi	40.0	38.38
TraesCS3B01G141800.1	Wheat	cytosol	38.59	37.13
Zm00001d039634_P001	Maize	cytosol	39.72	36.91
TraesCS3A01G122600.1	Wheat	cytosol	38.31	36.76
TraesCS3D01G124500.1	Wheat	cytosol	38.03	36.49
HORVU3Hr1G022840.8	Barley	cytosol	38.31	36.17
TraesCS2D01G542100.1	Wheat	cytosol	36.9	35.12
EES00202	Sorghum	cytosol, peroxisome, plastid	38.31	34.96
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	36.34	34.86
TraesCS2B01G570900.1	Wheat	cytosol	35.49	33.6
HORVU2Hr1G118350.1	Barley	cytosol	34.93	32.89
Zm00001d037627_P001	Maize	cytosol	34.37	32.62
Os05t0178100-01	Rice	plasma membrane	34.08	31.76
TraesCS2B01G570800.2	Wheat	cytosol	35.77	31.05
KXG21453	Sorghum	cytosol, peroxisome, plastid	35.77	30.9
Os04t0517600-00	Rice	cytosol, peroxisome	14.37	24.88

Protein Annotations

MapMan:11.6.1.6	Gene3D:2.60.120.330	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009686	GO:GO:0009719	GO:GO:0009740
GO:GO:0009987	GO:GO:0016491	GO:GO:0016707	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:K4BME0	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF95	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc03g119910.2	EnsemblPlants:Solyc03g119910.2.1
UniParc:UPI0002766998	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:68457818..68459199

Molecular Weight (calculated)

39378.2 Da

IEP (calculated)

8.585

GRAVY (calculated)

-0.243

Length

355 amino acids

Sequence
(BLAST)

001: MPSIISSQLD LYSIKELPES HAWKSSLDDD GSRNINAESI PVIDLNHDHK FVMDTIGHAC KTWGAFQIVN HNISHRLLNH METHGTRLFS LPMQQKLKAA
101: RSSDGIAGYG VARISSFFDK LMWSEGFTIF GSPLEHARQL WPYDYNKFCD VIEEYENEME KLAGRLMGLM LGSLGIAKED VKWAVGPRSG SSALQLNSYP
201: ACPDPDRAMG LAAHTDSTLL TILHQNNTSG LQVFKEGNGW VTVPPLRGAL VINVGDLLHI LSNGLYPSVL HRAIVNRTRH RLSVAYLYGP PSGVKISPLS
301: KLVDQRNPQM YRPVTWSEYL GTKAKHFDKA LSSVRLCAPR IGFANSKDQS GVQVG

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.