Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68965 | Canola | cytosol, nucleus, peroxisome | 97.49 | 97.49 |
| CDY39663 | Canola | cytosol, nucleus, peroxisome | 87.15 | 86.91 |
| AT1G15550.1 | Thale cress | cytosol, nucleus, peroxisome | 86.87 | 86.87 |
| CDY36572 | Canola | cytosol, nucleus, peroxisome | 86.87 | 86.63 |
| CDX87302 | Canola | cytosol | 15.92 | 74.03 |
| CDY39986 | Canola | cytosol | 24.02 | 68.8 |
| CDY37589 | Canola | cytosol, nucleus, peroxisome | 67.32 | 67.32 |
| CDY38661 | Canola | cytosol, nucleus, peroxisome | 67.04 | 67.04 |
| CDX87303 | Canola | cytosol | 29.33 | 60.0 |
| KRH23520 | Soybean | cytosol | 58.1 | 59.09 |
| KRH09799 | Soybean | cytosol, nucleus, peroxisome | 58.1 | 58.92 |
| PGSC0003DMT400014555 | Potato | cytosol | 55.59 | 55.9 |
| VIT_09s0002g05270.t01 | Wine grape | cytosol, nucleus, peroxisome | 56.98 | 55.89 |
| Solyc03g119910.2.1 | Tomato | cytosol | 55.31 | 55.77 |
| KRH44397 | Soybean | cytosol | 58.38 | 55.73 |
| CDY37588 | Canola | cytosol, nucleus, peroxisome | 53.35 | 54.42 |
| KRH47509 | Soybean | cytosol | 57.26 | 54.23 |
| CDY38660 | Canola | cytosol | 53.07 | 54.13 |
| Solyc06g066820.2.1 | Tomato | cytosol, peroxisome, plastid | 54.75 | 52.41 |
| PGSC0003DMT400042582 | Potato | cytosol, nucleus, peroxisome | 53.63 | 51.61 |
| VIT_09s0002g05300.t01 | Wine grape | cytosol | 51.12 | 50.97 |
| GSMUA_Achr5P09790_001 | Banana | cytosol | 48.32 | 46.76 |
| GSMUA_Achr7P13240_001 | Banana | cytosol, nucleus, peroxisome | 47.77 | 45.48 |
| CDY31424 | Canola | cytosol | 42.74 | 43.71 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plastid | 43.58 | 43.7 |
| CDX76441 | Canola | cytosol | 41.62 | 42.57 |
| GSMUA_Achr4P08970_001 | Banana | cytosol, nucleus, peroxisome | 43.58 | 42.39 |
| Os01t0177400-01 | Rice | golgi | 37.71 | 36.49 |
| TraesCS3D01G124500.1 | Wheat | cytosol | 37.43 | 36.22 |
| TraesCS3A01G122600.1 | Wheat | cytosol | 37.43 | 36.22 |
| Zm00001d039634_P001 | Maize | cytosol | 38.55 | 36.13 |
| TraesCS3B01G141800.1 | Wheat | cytosol | 36.87 | 35.77 |
| HORVU3Hr1G022840.8 | Barley | cytosol | 37.43 | 35.64 |
| TraesCS2A01G540400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 36.31 | 35.14 |
| EES00202 | Sorghum | cytosol, peroxisome, plastid | 37.71 | 34.7 |
| HORVU2Hr1G118350.1 | Barley | cytosol | 36.31 | 34.48 |
| TraesCS2D01G542100.1 | Wheat | cytosol | 35.47 | 34.05 |
| TraesCS2B01G570900.1 | Wheat | cytosol | 35.47 | 33.87 |
| Os05t0178100-01 | Rice | plasma membrane | 34.36 | 32.28 |
| TraesCS2B01G570800.2 | Wheat | cytosol | 35.2 | 30.81 |
| Zm00001d037627_P001 | Maize | cytosol | 31.84 | 30.48 |
| KXG21453 | Sorghum | cytosol, peroxisome, plastid | 32.4 | 28.22 |
| Os04t0517600-00 | Rice | cytosol, peroxisome | 12.85 | 22.44 |
Protein Annotations
| MapMan:11.6.1.6 | Gene3D:2.60.120.330 | GO:A0A078CY01 | EnsemblPlants:CDX81720 | ProteinID:CDX81720 | ProteinID:CDX81720.1 |
| ncoils:Coil | InterPro:DIOX_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00136646001 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 |
| InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 | PRINTS:PR00682 | PFscan:PS51471 | PANTHER:PTHR10209 |
| PANTHER:PTHR10209:SF95 | SUPFAM:SSF51197 | UniParc:UPI0004EED32A | : | : | : |
Description
BnaC08g38810D
Coordinates
chrLK031826:-:461863..463500
Molecular Weight (calculated)
40255.0 Da
IEP (calculated)
7.045
GRAVY (calculated)
-0.280
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTVLTDVFR GHPIHLPHTH QPDFTSLSEL PDSYTWTSKD DPLFTAPPSP PGAGESIPLI DLNHPDAANQ IGRACRTWGA FQIANHGVPL ELLQDIEFLT
101: GSLFQLPVQH KLEAARSDAG FSGYGVARIS SFFNKKMWSE GFTITGSPLN DFRKLWPQLH LNYCDIVEQY EEQMQKLASK LMWLSLNSLG VSEEDIKWAR
201: VSSDLNWAQS ALQLNHYPVC PEPDRAMGLA PHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPVPGSLVV NVGDLFHILS NGLFKSVIHR VRVNQTRPRL
301: SVAFLWGPRS DTKISPVPKL VSPDESPLYR SVTWTEYLRT KATHFNKALS MIRNHREK
101: GSLFQLPVQH KLEAARSDAG FSGYGVARIS SFFNKKMWSE GFTITGSPLN DFRKLWPQLH LNYCDIVEQY EEQMQKLASK LMWLSLNSLG VSEEDIKWAR
201: VSSDLNWAQS ALQLNHYPVC PEPDRAMGLA PHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPVPGSLVV NVGDLFHILS NGLFKSVIHR VRVNQTRPRL
301: SVAFLWGPRS DTKISPVPKL VSPDESPLYR SVTWTEYLRT KATHFNKALS MIRNHREK
001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
Arabidopsis Description
GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.