Factsheet for PGSC0003DMT400042582

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	86.56	86.1
PGSC0003DMT400014555	Potato	cytosol	71.51	74.72
CDX87302	Canola	cytosol	13.44	64.94
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	62.9	64.11
KRH23520	Soybean	cytosol	59.95	63.35
KRH09799	Soybean	cytosol, nucleus, peroxisome	59.41	62.61
KRH44397	Soybean	cytosol	58.06	57.6
VIT_09s0002g05300.t01	Wine grape	cytosol	55.38	57.38
KRH47509	Soybean	cytosol	57.26	56.35
CDY39986	Canola	cytosol	18.82	56.0
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	52.42	54.47
AT1G80340.1	Thale cress	cytosol	50.81	54.47
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	52.15	54.19
CDY68965	Canola	cytosol, nucleus, peroxisome	52.15	54.19
CDX81720	Canola	cytosol, nucleus, peroxisome	51.61	53.63
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	51.61	53.48
CDY39663	Canola	cytosol, nucleus, peroxisome	51.61	53.48
CDY36572	Canola	cytosol, nucleus, peroxisome	51.34	53.2
CDY38661	Canola	cytosol, nucleus, peroxisome	51.08	53.07
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	50.81	52.79
CDY37589	Canola	cytosol, nucleus, peroxisome	50.81	52.79
AT1G80330.1	Thale cress	cytosol	50.27	52.68
Bra008481.1-P	Field mustard	cytosol	48.66	51.57
CDY37588	Canola	cytosol, nucleus, peroxisome	48.12	51.0
CDY38660	Canola	cytosol	48.12	51.0
GSMUA_Achr5P09790_001	Banana	cytosol	50.54	50.81
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	49.19	48.67
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	45.97	46.47
PGSC0003DMT400059595	Potato	cytosol	42.74	45.56
PGSC0003DMT400074744	Potato	cytosol	41.67	44.41
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	42.47	44.26
PGSC0003DMT400086139	Potato	cytosol	41.4	44.13
CDX87303	Canola	cytosol	20.7	44.0
Os01t0177400-01	Rice	golgi	39.52	39.73
TraesCS3B01G141800.1	Wheat	cytosol	38.98	39.3
TraesCS3D01G124500.1	Wheat	cytosol	38.98	39.19
TraesCS3A01G122600.1	Wheat	cytosol	38.98	39.19
HORVU3Hr1G022840.8	Barley	cytosol	39.25	38.83
Zm00001d039634_P001	Maize	cytosol	39.52	38.48
EES00202	Sorghum	cytosol, peroxisome, plastid	38.98	37.28
PGSC0003DMT400044153	Potato	nucleus	29.3	37.07
Zm00001d037627_P001	Maize	cytosol	35.22	35.03
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	34.14	34.32
TraesCS2D01G542100.1	Wheat	cytosol	34.41	34.32
HORVU2Hr1G118350.1	Barley	cytosol	34.41	33.95
TraesCS2B01G570900.1	Wheat	cytosol	34.14	33.87
TraesCS2B01G570800.2	Wheat	cytosol	35.75	32.52
Os05t0178100-01	Rice	plasma membrane	33.06	32.28
KXG21453	Sorghum	cytosol, peroxisome, plastid	35.48	32.12
Os04t0517600-00	Rice	cytosol, peroxisome	14.25	25.85

Protein Annotations

EntrezGene:102585516	MapMan:11.6.1.6	Gene3D:2.60.120.330	ProteinID:AAK91507	ProteinID:AAK91507.1	EMBL:AY039111
ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	UniProt:M1BDA3	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400016516
PGSC:PGSC0003DMG400016516	EnsemblPlants:PGSC0003DMT400042582	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF95	SUPFAM:SSF51197
UniParc:UPI000296472E	RefSeq:XP_006356177.1	SEG:seg	:	:	:

Description

Gibberellin 3-oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400016516]

Coordinates

chr6:+:49523127..49525846

Molecular Weight (calculated)

41318.2 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.335

Length

372 amino acids

Sequence
(BLAST)

001: MPSRISDSFR PHHSQKHFDL NSIKELPESH AWTSSNDHYT QENSCNFESI PVIDLDNNNN NNNNILDHIG HACKKWGAFQ IINHSISERL LQDIDVAGKT
101: LFSLPMQQKL KAARSPDGVT GYGVARISSF FSKLMWSEGF TIVGSPIEHA RQLWPKDYKK FCEVIEEYEK EMEKLAGRLM WLILGSLGIT KDDVKWAVGP
201: KGETKEGCAA LQLNSYPACP DPGRAMGLAA HTDSTILTIL HQNNTSGLQV YQEGNGWVTV PPIPGALVVN VGDLLHILSN GSYPSVLHRA VVNRTRHRLS
301: VAYLYGPPTG VRVSPLSKLL DHRHPPLYRA VTWSEYLGTK AKYFDKALSS VRLCVPLSGF ADAKDHNGVQ VG

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.