Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87302 | Canola | cytosol | 56.0 | 90.91 |
| AT1G80340.1 | Thale cress | cytosol | 88.0 | 31.7 |
| CDY38661 | Canola | cytosol, nucleus, peroxisome | 89.6 | 31.28 |
| CDY37589 | Canola | cytosol, nucleus, peroxisome | 88.8 | 31.01 |
| CDY39663 | Canola | cytosol, nucleus, peroxisome | 70.4 | 24.51 |
| CDY68965 | Canola | cytosol, nucleus, peroxisome | 69.6 | 24.3 |
| CDX81720 | Canola | cytosol, nucleus, peroxisome | 68.8 | 24.02 |
| CDY36572 | Canola | cytosol, nucleus, peroxisome | 68.8 | 23.96 |
| PGSC0003DMT400014555 | Potato | cytosol | 58.4 | 20.51 |
| Solyc03g119910.2.1 | Tomato | cytosol | 56.8 | 20.0 |
| KRH09799 | Soybean | cytosol, nucleus, peroxisome | 56.0 | 19.83 |
| KRH23520 | Soybean | cytosol | 55.2 | 19.6 |
| VIT_09s0002g05270.t01 | Wine grape | cytosol, nucleus, peroxisome | 56.8 | 19.45 |
| Solyc06g066820.2.1 | Tomato | cytosol, peroxisome, plastid | 57.6 | 19.25 |
| VIT_09s0002g05300.t01 | Wine grape | cytosol | 55.2 | 19.22 |
| KRH44397 | Soybean | cytosol | 56.8 | 18.93 |
| PGSC0003DMT400042582 | Potato | cytosol, nucleus, peroxisome | 56.0 | 18.82 |
| CDY38660 | Canola | cytosol | 52.0 | 18.52 |
| KRH47509 | Soybean | cytosol | 54.4 | 17.99 |
| CDY37588 | Canola | cytosol, nucleus, peroxisome | 50.4 | 17.95 |
| Os04t0517600-00 | Rice | cytosol, peroxisome | 28.0 | 17.07 |
| CDX76441 | Canola | cytosol | 46.4 | 16.57 |
| CDY31424 | Canola | cytosol | 46.4 | 16.57 |
| GSMUA_Achr7P13240_001 | Banana | cytosol, nucleus, peroxisome | 47.2 | 15.69 |
| GSMUA_Achr5P09790_001 | Banana | cytosol | 44.8 | 15.14 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plastid | 42.4 | 14.85 |
| GSMUA_Achr4P08970_001 | Banana | cytosol, nucleus, peroxisome | 42.4 | 14.4 |
| Os01t0177400-01 | Rice | golgi | 42.4 | 14.32 |
| Os05t0178100-01 | Rice | plasma membrane | 42.4 | 13.91 |
| TraesCS2A01G540400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 40.8 | 13.78 |
| Zm00001d039634_P001 | Maize | cytosol | 41.6 | 13.61 |
| HORVU3Hr1G022840.8 | Barley | cytosol | 40.0 | 13.3 |
| HORVU2Hr1G118350.1 | Barley | cytosol | 40.0 | 13.26 |
| TraesCS3D01G124500.1 | Wheat | cytosol | 39.2 | 13.24 |
| EES00202 | Sorghum | cytosol, peroxisome, plastid | 40.8 | 13.11 |
| TraesCS2B01G570900.1 | Wheat | cytosol | 39.2 | 13.07 |
| TraesCS3B01G141800.1 | Wheat | cytosol | 38.4 | 13.01 |
| TraesCS3A01G122600.1 | Wheat | cytosol | 38.4 | 12.97 |
| TraesCS2B01G570800.2 | Wheat | cytosol | 41.6 | 12.71 |
| TraesCS2D01G542100.1 | Wheat | cytosol | 36.0 | 12.06 |
| Zm00001d037627_P001 | Maize | cytosol | 35.2 | 11.76 |
| KXG21453 | Sorghum | cytosol, peroxisome, plastid | 35.2 | 10.71 |
| CDX87303 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.120.330 | MapMan:50.1.13 | GO:A0A078HQS3 | UniProt:A0A078HQS3 | EnsemblPlants:CDY39986 | ProteinID:CDY39986 |
| ProteinID:CDY39986.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 |
| GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00068878001 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | InterPro:Oxoglu/Fe-dep_dioxygenase |
| PFAM:PF03171 | PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF95 | SUPFAM:SSF51197 | UniParc:UPI0004EF405F |
Description
BnaC06g40640DBnaC06g40640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQS3]
Coordinates
chrLK032461:+:267407..267784
Molecular Weight (calculated)
14129.3 Da
IEP (calculated)
9.959
GRAVY (calculated)
0.092
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MTILYQNNTA GLQVFRDDVG WITVPPVPGS LVVNVGDLLH ILTNGIFRSV LHRARVNHLR SRFSMAYLWG PPSDQMISPL PKLVDPLQSP LYPSLTWKQY
101: LATKAIHFNQ SLSFIRNCLS LDQIS
101: LATKAIHFNQ SLSFIRNCLS LDQIS
001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
Arabidopsis Description
GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.