Factsheet for TraesCS2A01G540400.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

peroxisome 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G542100.1	Wheat	cytosol	86.76	86.06
TraesCS2B01G570900.1	Wheat	cytosol	80.0	78.93
TraesCS3A01G122600.1	Wheat	cytosol	67.03	67.03
HORVU2Hr1G118350.1	Barley	cytosol	65.68	64.46
Zm00001d039634_P001	Maize	cytosol	64.86	62.83
Os01t0177400-01	Rice	golgi	61.35	61.35
EES00202	Sorghum	cytosol, peroxisome, plastid	64.32	61.18
CDX87302	Canola	cytosol	10.54	50.65
GSMUA_Achr5P09790_001	Banana	cytosol	41.89	41.89
CDY39986	Canola	cytosol	13.78	40.8
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	39.19	39.4
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	38.38	38.9
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	37.3	38.87
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	39.46	38.83
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	37.03	38.38
VIT_09s0002g05300.t01	Wine grape	cytosol	37.03	38.16
KRH61843	Soybean	cytosol, peroxisome, plastid	34.05	36.95
CDY68965	Canola	cytosol, nucleus, peroxisome	35.41	36.59
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	35.41	36.59
KRH09799	Soybean	cytosol, nucleus, peroxisome	34.86	36.54
Solyc03g119910.2.1	Tomato	cytosol	34.86	36.34
CDX81720	Canola	cytosol, nucleus, peroxisome	35.14	36.31
PGSC0003DMT400014555	Potato	cytosol	34.86	36.24
KRH52518	Soybean	cytosol	33.78	36.02
CDY39663	Canola	cytosol, nucleus, peroxisome	34.86	35.93
KRH23520	Soybean	cytosol	34.05	35.8
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	34.59	35.65
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	35.95	35.56
KRH05073	Soybean	cytosol	33.51	35.43
CDY36572	Canola	cytosol, nucleus, peroxisome	34.32	35.38
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	34.05	35.2
AT1G80340.1	Thale cress	cytosol	32.97	35.16
CDY38660	Canola	cytosol	32.97	34.76
CDY37589	Canola	cytosol, nucleus, peroxisome	33.51	34.64
KRH16040	Soybean	cytosol	32.43	34.58
Bra008481.1-P	Field mustard	cytosol	32.7	34.47
CDY37588	Canola	cytosol, nucleus, peroxisome	32.7	34.47
CDY38661	Canola	cytosol, nucleus, peroxisome	33.24	34.36
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	34.32	34.14
KRH44397	Soybean	cytosol	34.59	34.13
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	32.97	34.08
AT1G80330.1	Thale cress	cytosol	32.43	33.8
KRH47509	Soybean	cytosol	34.32	33.6
PGSC0003DMT400059595	Potato	cytosol	31.08	32.95
CDY31424	Canola	cytosol	31.08	32.86
CDX76441	Canola	cytosol	31.08	32.86
Bra020909.1-P	Field mustard	cytosol	31.08	32.86
PGSC0003DMT400074744	Potato	cytosol	30.54	32.38
PGSC0003DMT400086139	Potato	cytosol	30.54	32.38
AT4G21690.1	Thale cress	cytosol	30.54	32.38
Solyc05g052740.1.1	Tomato	cytosol	30.27	32.09
Solyc01g058250.1.1	Tomato	cytosol	30.0	31.9
PGSC0003DMT400044153	Potato	nucleus	23.51	29.59
CDX87303	Canola	cytosol	13.51	28.57

Protein Annotations

EnsemblPlants:TraesCS2A01G540400.1	EnsemblPlantsGene:TraesCS2A01G540400	Gene3D:2.60.120.330	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:DIOX_N	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PANTHER:PTHR10209	PANTHER:PTHR10209:SF245	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	SEG:seg	SUPFAM:SSF51197	MapMan:11.6.1.6	:	:

Description

No Description!

Coordinates

chr2A:-:752336461..752337915

Molecular Weight (calculated)

40623.0 Da

IEP (calculated)

6.112

GRAVY (calculated)

-0.249

Length

370 amino acids

Sequence
(BLAST)

001: MSAPSQLSKD PHNDYFDFGA ARQVPETHTW EGLYEHPLVD GGVGAAEDAV PVVDLRDPHA AEAVARASEQ WGTFLLEGHG IPSELLARVE ARIASVFALP
101: ASEKMRAARQ DGQSHGYGLP PIASYFPKTT WSEGYTLSPA NLRAELRKIW PDAGGDYRHF CDVMEEFHRQ MLAVVDKLTV LFLAALGVAS VEAGRKIVET
201: MSETVTMHIN WYPKCPDPKR TLGLAIHTDS GFFTFLMQSH VSGLQLFRHE PDRWVGVPPG ALIVNIGDLF QILTNGRFRS TYHRAVVNRE STRVSVAYHL
301: GPPADAKVAP LREAVGGGKP AYRTVTWREY FLVRKEAFTT GGSALQMVSL SPGDHDDDGD GADQISEISS

Best Arabidopsis Sequence Match ( AT1G80330.1 )
(BLAST)

001: MPSLAEEICI GNLGSLQTLP ESFTWKLTAA DSLLRPSSAV SFDAVEESIP VIDLSNPDVT TLIGDASKTW GAFQIANHGI SQKLLDDIES LSKTLFDMPS
101: ERKLEAASSD KGVSGYGEPR ISPFFEKKMW SEGFTIADDS YRNHFNTLWP HDHTKYCGII QEYVDEMEKL ASRLLYCILG SLGVTVEDIE WAHKLEKSGS
201: KVGRGAIRLN HYPVCPEPER AMGLAAHTDS TILTILHQSN TGGLQVFREE SGWVTVEPAP GVLVVNIGDL FHILSNGKIP SVVHRAKVNH TRSRISIAYL
301: WGGPAGDVQI APISKLTGPA EPSLYRSITW KEYLQIKYEV FDKAMDAIRV VNPTN

Arabidopsis Description

GA3OX4Gibberellin 3-beta-dioxygenase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C971]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.