Factsheet for VIT_04s0008g04940.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
peroxisome 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059595	Potato	cytosol	52.96	53.87
KRH61843	Soybean	cytosol, peroxisome, plastid	51.55	53.67
Solyc05g052740.1.1	Tomato	cytosol	52.68	53.58
KRH05073	Soybean	cytosol	52.68	53.43
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	54.93	53.42
KRH52518	Soybean	cytosol	51.83	53.03
KRH16040	Soybean	cytosol	51.83	53.03
PGSC0003DMT400074744	Potato	cytosol	52.11	53.01
Solyc01g058250.1.1	Tomato	cytosol	51.83	52.87
PGSC0003DMT400086139	Potato	cytosol	51.55	52.44
VIT_09s0002g05300.t01	Wine grape	cytosol	50.7	50.14
AT4G21690.1	Thale cress	cytosol	45.92	46.7
GSMUA_Achr5P09790_001	Banana	cytosol	48.45	46.49
CDY31424	Canola	cytosol	45.63	46.29
Bra020909.1-P	Field mustard	cytosol	45.35	46.0
CDX76441	Canola	cytosol	44.79	45.43
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	47.61	44.95
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	45.92	44.29
PGSC0003DMT400044153	Potato	nucleus	36.62	44.22
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	42.54	42.3
Os01t0177400-01	Rice	golgi	41.13	39.46
Zm00001d039634_P001	Maize	cytosol	42.25	39.27
TraesCS3A01G122600.1	Wheat	cytosol	40.85	39.19
TraesCS3B01G141800.1	Wheat	cytosol	40.56	39.02
TraesCS3D01G124500.1	Wheat	cytosol	40.0	38.38
HORVU3Hr1G022840.8	Barley	cytosol	40.28	38.03
EES00202	Sorghum	cytosol, peroxisome, plastid	41.13	37.53
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	38.87	37.3
TraesCS2D01G542100.1	Wheat	cytosol	38.87	37.0
TraesCS2B01G570900.1	Wheat	cytosol	38.31	36.27
Os05t0178100-01	Rice	plasma membrane	38.03	35.43
HORVU2Hr1G118350.1	Barley	cytosol	37.18	35.01
Zm00001d037627_P001	Maize	cytosol	34.37	32.62
TraesCS2B01G570800.2	Wheat	cytosol	37.46	32.52
KXG21453	Sorghum	cytosol, peroxisome, plastid	36.34	31.39
Os04t0517600-00	Rice	cytosol, peroxisome	12.96	22.44

Protein Annotations

EntrezGene:100267924	wikigene:100267924	MapMan:11.6.1.6	Gene3D:2.60.120.330	ProteinID:CBI20992	ProteinID:CBI20992.3
UniProt:D7SUP3	InterPro:DIOX_N	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009416	GO:GO:0009628	GO:GO:0009686	GO:GO:0009719	GO:GO:0009740	GO:GO:0009987
GO:GO:0016491	GO:GO:0016707	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	EntrezGene:LOC100267924	wikigene:LOC100267924	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF197	SUPFAM:SSF51197	UniParc:UPI00015C914B	ArrayExpress:VIT_04s0008g04940
EnsemblPlantsGene:VIT_04s0008g04940	EnsemblPlants:VIT_04s0008g04940.t01	RefSeq:XP_002282411	RefSeq:XP_002282411.1	:	:

Description

No Description!

Coordinates

chr4:-:4431414..4432859

Molecular Weight (calculated)

39677.6 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.175

Length

355 amino acids

Sequence
(BLAST)

001: MASTLSQVFR DNPLPLNHII PLDFTSVHSL PESHVWPAFD GFPFGTTYPG EKFSIPIIDL MDPNAAQLVG HACEKWGAFQ LTSHGLPSIL TDDVESQTRR
101: LFALPAHEKM KALRLPSGGT GYGQARISPF YPKFMWHEGF TIMGSAVDHA RKLWPDDYKG FCDVMEDYQK KMKELAESLL HIFLESLDIS KEEYRSTTIQ
201: RGREACNTAL QLNSYPPCPD PNRAMGLAPH TDSLLFTIVH QSHTSGLQIL RDGVGWITVF PLEGALVVNV GDLLHILSNG RYPSVLHRAV VNQAEHRISL
301: AYFYGPPADS LISPLCNLVS SGQQVVAPRY RSVSVKEYVD LKEKHKEKAL SLLRL

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.