Factsheet for VIT_09s0002g05300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	67.97	66.85
CDX87302	Canola	cytosol	13.37	62.34
KRH09799	Soybean	cytosol, nucleus, peroxisome	55.71	56.66
KRH23520	Soybean	cytosol	55.15	56.25
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	58.5	56.15
Solyc03g119910.2.1	Tomato	cytosol	55.43	56.06
PGSC0003DMT400014555	Potato	cytosol	55.15	55.62
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	57.38	55.38
CDY39986	Canola	cytosol	19.22	55.2
KRH44397	Soybean	cytosol	57.1	54.67
CDY38661	Canola	cytosol, nucleus, peroxisome	54.04	54.19
CDY37589	Canola	cytosol, nucleus, peroxisome	53.76	53.91
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	53.48	53.63
KRH47509	Soybean	cytosol	56.27	53.44
AT1G80340.1	Thale cress	cytosol	50.97	52.74
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	51.81	51.96
CDY68965	Canola	cytosol, nucleus, peroxisome	51.53	51.68
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	51.53	51.68
CDY39663	Canola	cytosol, nucleus, peroxisome	51.25	51.25
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	51.25	51.25
CDX81720	Canola	cytosol, nucleus, peroxisome	50.97	51.12
CDY36572	Canola	cytosol, nucleus, peroxisome	50.97	50.97
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	50.14	50.7
CDY38660	Canola	cytosol	47.63	48.72
CDY37588	Canola	cytosol, nucleus, peroxisome	47.08	48.15
Bra008481.1-P	Field mustard	cytosol	46.8	47.86
AT1G80330.1	Thale cress	cytosol	47.08	47.61
GSMUA_Achr5P09790_001	Banana	cytosol	48.75	47.3
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	47.63	45.48
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	45.13	45.38
CDX87303	Canola	cytosol	22.01	45.14
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	44.85	43.75
TraesCS3A01G122600.1	Wheat	cytosol	40.39	39.19
TraesCS3B01G141800.1	Wheat	cytosol	39.83	38.75
Zm00001d039634_P001	Maize	cytosol	40.95	38.48
HORVU3Hr1G022840.8	Barley	cytosol	40.11	38.3
TraesCS3D01G124500.1	Wheat	cytosol	39.28	38.11
Os01t0177400-01	Rice	golgi	38.72	37.57
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	38.16	37.03
TraesCS2D01G542100.1	Wheat	cytosol	37.88	36.46
EES00202	Sorghum	cytosol, peroxisome, plastid	39.0	35.99
TraesCS2B01G570900.1	Wheat	cytosol	37.33	35.73
HORVU2Hr1G118350.1	Barley	cytosol	37.33	35.54
Zm00001d037627_P001	Maize	cytosol	35.65	34.22
TraesCS2B01G570800.2	Wheat	cytosol	37.6	33.01
Os05t0178100-01	Rice	plasma membrane	34.54	32.55
KXG21453	Sorghum	cytosol, peroxisome, plastid	34.54	30.17
Os04t0517600-00	Rice	cytosol, peroxisome	13.09	22.93

Protein Annotations

EntrezGene:100249739	wikigene:100249739	MapMan:11.6.1.6	Gene3D:2.60.120.330	EMBL:AM434077	ProteinID:CAN73736
ProteinID:CAN73736.1	ProteinID:CBI36204	ProteinID:CBI36204.3	UniProt:D7U0Q8	InterPro:DIOX_N	EMBL:FN596494
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009686
GO:GO:0009719	GO:GO:0009740	GO:GO:0009987	GO:GO:0016491	GO:GO:0016707	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100249739	wikigene:LOC100249739
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF95
SUPFAM:SSF51197	UniParc:UPI00015C8F98	ArrayExpress:VIT_09s0002g05300	EnsemblPlantsGene:VIT_09s0002g05300	EnsemblPlants:VIT_09s0002g05300.t01	unigene:Vvi.22576
RefSeq:XP_002284981	RefSeq:XP_002284981.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:5037560..5040878

Molecular Weight (calculated)

39187.0 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.041

Length

359 amino acids

Sequence
(BLAST)

001: MPSELSDAFK SMPANLYKKQ LDLNSIQELP DSHAWASLGE HPCVDSLIAE SVPVIDLSDP NALTLVGDAC KSWGVFQVIN HGIPISLLEA IEDASRNLFA
101: LPAEQKLKAT RPPDGFSGFG QPRIAPFFAK QMWYEGFTVL GSPLELVSKL WPEEYCTKFC EVTEEYDKQM KQLANKLLWL LLGSLGINKE DVEWAGPEGQ
201: LEGAHAALQL NSYPACPQPD KAMGLAEHTD SSLLTILYQG STSGLQVVLE GSGWITVPPL PGALVVNIGD LLHILSNAAF PSVLHRAMVN NSKQRISVAY
301: FYGPPATIPV APIPKLVDSS HPPVYRSVTW SEFLATKAKH FNKALSLVRM PVPETDSSE

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.