Factsheet for VIT_09s0002g05270.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119910.2.1	Tomato	cytosol	66.85	68.73
PGSC0003DMT400014555	Potato	cytosol	66.3	67.98
VIT_09s0002g05300.t01	Wine grape	cytosol	66.85	67.97
KRH09799	Soybean	cytosol, nucleus, peroxisome	64.38	66.57
KRH23520	Soybean	cytosol	63.56	65.91
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	67.4	65.78
CDX87302	Canola	cytosol	13.7	64.94
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	64.11	62.9
KRH44397	Soybean	cytosol	63.29	61.6
KRH47509	Soybean	cytosol	62.74	60.58
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	56.16	57.26
CDY68965	Canola	cytosol, nucleus, peroxisome	56.16	57.26
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	56.16	57.26
CDX81720	Canola	cytosol, nucleus, peroxisome	55.89	56.98
CDY39986	Canola	cytosol	19.45	56.8
CDY39663	Canola	cytosol, nucleus, peroxisome	55.34	56.27
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	55.34	56.27
CDY36572	Canola	cytosol, nucleus, peroxisome	55.07	55.99
AT1G80340.1	Thale cress	cytosol	53.15	55.91
CDY38661	Canola	cytosol, nucleus, peroxisome	53.97	55.03
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	53.42	54.93
CDY37589	Canola	cytosol, nucleus, peroxisome	53.7	54.75
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	53.7	54.75
CDY37588	Canola	cytosol, nucleus, peroxisome	50.41	52.42
Bra008481.1-P	Field mustard	cytosol	50.41	52.42
CDY38660	Canola	cytosol	50.14	52.14
GSMUA_Achr5P09790_001	Banana	cytosol	51.23	50.54
AT1G80330.1	Thale cress	cytosol	48.77	50.14
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	50.96	49.47
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	48.22	47.83
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	45.48	46.5
CDX87303	Canola	cytosol	22.19	46.29
Os01t0177400-01	Rice	golgi	40.55	40.0
TraesCS3A01G122600.1	Wheat	cytosol	40.27	39.73
TraesCS3B01G141800.1	Wheat	cytosol	40.0	39.57
Zm00001d039634_P001	Maize	cytosol	40.82	39.01
TraesCS3D01G124500.1	Wheat	cytosol	39.18	38.65
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	38.9	38.38
TraesCS2D01G542100.1	Wheat	cytosol	39.18	38.34
HORVU3Hr1G022840.8	Barley	cytosol	39.45	38.3
EES00202	Sorghum	cytosol, peroxisome, plastid	39.45	37.02
TraesCS2B01G570900.1	Wheat	cytosol	37.81	36.8
HORVU2Hr1G118350.1	Barley	cytosol	36.99	35.81
Zm00001d037627_P001	Maize	cytosol	35.89	35.03
TraesCS2B01G570800.2	Wheat	cytosol	38.08	33.99
Os05t0178100-01	Rice	plasma membrane	34.25	32.81
KXG21453	Sorghum	cytosol, peroxisome, plastid	35.62	31.63
Os04t0517600-00	Rice	cytosol, peroxisome	14.52	25.85

Protein Annotations

EntrezGene:100265167	wikigene:100265167	MapMan:11.6.1.6	Gene3D:2.60.120.330	EMBL:AM428185	ProteinID:CAN80137
ProteinID:CAN80137.1	ProteinID:CBI36201	ProteinID:CBI36201.3	UniProt:D7U0Q5	InterPro:DIOX_N	EMBL:FN596494
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009686
GO:GO:0009719	GO:GO:0009740	GO:GO:0009987	GO:GO:0016491	GO:GO:0016707	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EMBL:KC898176	EntrezGene:LOC100265167
wikigene:LOC100265167	RefSeq:NP_001269085.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF95	SUPFAM:SSF51197	UniParc:UPI0001BE4937	ArrayExpress:VIT_09s0002g05270	EnsemblPlantsGene:VIT_09s0002g05270
EnsemblPlants:VIT_09s0002g05270.t01	:	:	:	:	:

Description

GA3ox1 [Source:UniProtKB/TrEMBL;Acc:D7U0Q5]

Coordinates

chr9:+:4993458..4995066

Molecular Weight (calculated)

40159.0 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.132

Length

365 amino acids

Sequence
(BLAST)

001: MPSRISDAFK AHPLHLNHRH LDLNSVQELP DLYAWAGVDE NPSGDSLITE SVPVIDLTDP NASELVGHAC KSWGVFQVTN HGIPGSLLDD IESAGRSLFS
101: LPAQQKLKAA RSPDGVAGYG LARISSFFNK LMWYEGFTIF GSPLEHARQL WPQDYTKFCD VTEEFEKEMN QLAERLMWLM LGSLGITKED LNWAGSKGDF
201: KAALQLNSYP ACPEPDRAMG LAAHTDSSLF TILYQNTVSG LQVQREGAGW ITVPPLPGAL VINVGDLLHI LSNGVFPSVV HRALVNRTKH RLSVAYLYGP
301: PAGVPISPVP KLVDSTHPPL YRPVTWSEYL CTKAKHFDKA LSLVRLCMPR NGFIDVNDHN GVKVG

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.