Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026122.1-P | Field mustard | cytosol, nucleus, peroxisome | 99.72 | 99.72 |
| CDY39663 | Canola | cytosol, nucleus, peroxisome | 98.05 | 98.05 |
| CDY68965 | Canola | cytosol, nucleus, peroxisome | 87.47 | 87.71 |
| CDX81720 | Canola | cytosol, nucleus, peroxisome | 86.63 | 86.87 |
| AT1G15550.1 | Thale cress | cytosol, nucleus, peroxisome | 86.07 | 86.31 |
| CDX87302 | Canola | cytosol | 16.16 | 75.32 |
| CDY37589 | Canola | cytosol, nucleus, peroxisome | 69.08 | 69.27 |
| CDY38661 | Canola | cytosol, nucleus, peroxisome | 68.8 | 68.99 |
| CDY39986 | Canola | cytosol | 23.96 | 68.8 |
| CDX87303 | Canola | cytosol | 30.36 | 62.29 |
| KRH23520 | Soybean | cytosol | 56.82 | 57.95 |
| KRH09799 | Soybean | cytosol, nucleus, peroxisome | 56.27 | 57.22 |
| Solyc03g119910.2.1 | Tomato | cytosol | 55.99 | 56.62 |
| PGSC0003DMT400014555 | Potato | cytosol | 55.71 | 56.18 |
| KRH44397 | Soybean | cytosol | 58.5 | 56.0 |
| VIT_09s0002g05270.t01 | Wine grape | cytosol, nucleus, peroxisome | 55.99 | 55.07 |
| CDY37588 | Canola | cytosol, nucleus, peroxisome | 53.76 | 54.99 |
| CDY38660 | Canola | cytosol | 53.2 | 54.42 |
| KRH47509 | Soybean | cytosol | 57.1 | 54.23 |
| Solyc06g066820.2.1 | Tomato | cytosol, peroxisome, plastid | 54.6 | 52.41 |
| PGSC0003DMT400042582 | Potato | cytosol, nucleus, peroxisome | 53.2 | 51.34 |
| VIT_09s0002g05300.t01 | Wine grape | cytosol | 50.97 | 50.97 |
| GSMUA_Achr5P09790_001 | Banana | cytosol | 47.91 | 46.49 |
| GSMUA_Achr7P13240_001 | Banana | cytosol, nucleus, peroxisome | 47.08 | 44.95 |
| CDY31424 | Canola | cytosol | 42.06 | 43.14 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plastid | 42.9 | 43.14 |
| CDX76441 | Canola | cytosol | 41.5 | 42.57 |
| GSMUA_Achr4P08970_001 | Banana | cytosol, nucleus, peroxisome | 43.45 | 42.39 |
| TraesCS3A01G122600.1 | Wheat | cytosol | 38.44 | 37.3 |
| Os01t0177400-01 | Rice | golgi | 37.88 | 36.76 |
| TraesCS3D01G124500.1 | Wheat | cytosol | 37.6 | 36.49 |
| HORVU3Hr1G022840.8 | Barley | cytosol | 37.88 | 36.17 |
| TraesCS3B01G141800.1 | Wheat | cytosol | 37.05 | 36.04 |
| Zm00001d039634_P001 | Maize | cytosol | 38.16 | 35.86 |
| EES00202 | Sorghum | cytosol, peroxisome, plastid | 38.16 | 35.22 |
| TraesCS2A01G540400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 35.38 | 34.32 |
| HORVU2Hr1G118350.1 | Barley | cytosol | 35.38 | 33.69 |
| TraesCS2B01G570900.1 | Wheat | cytosol | 34.82 | 33.33 |
| TraesCS2D01G542100.1 | Wheat | cytosol | 34.26 | 32.98 |
| Os05t0178100-01 | Rice | plasma membrane | 34.26 | 32.28 |
| TraesCS2B01G570800.2 | Wheat | cytosol | 35.38 | 31.05 |
| Zm00001d037627_P001 | Maize | cytosol | 31.75 | 30.48 |
| KXG21453 | Sorghum | cytosol, peroxisome, plastid | 32.59 | 28.47 |
| Os04t0517600-00 | Rice | cytosol, peroxisome | 13.09 | 22.93 |
Protein Annotations
| MapMan:11.6.1.6 | Gene3D:2.60.120.330 | GO:A0A078HFJ8 | UniProt:A0A078HFJ8 | EnsemblPlants:CDY36572 | ProteinID:CDY36572 |
| ProteinID:CDY36572.1 | ncoils:Coil | InterPro:DIOX_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0046872 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00062262001 |
| InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | InterPro:Oxoglu/Fe-dep_dioxygenase | PFAM:PF03171 | PFAM:PF14226 |
| PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF95 | SUPFAM:SSF51197 | UniParc:UPI0004EEDAB7 | SEG:seg |
Description
BnaA06g10250DBnaA06g10250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFJ8]
Coordinates
chrLK032378:-:222326..223870
Molecular Weight (calculated)
40067.6 Da
IEP (calculated)
6.139
GRAVY (calculated)
-0.241
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTMLTDVFR GHPIHLPHSH QPDFTSLSEL PDSYTWTPKD DPLLDAAPSP PAASENIPLI DLNHPDAANQ IGSACRTWGA FQIANHGVPL ELLQGIEFLT
101: GSLFQLPVQR KLKAARSETG FSGYGVARIS SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNNYCDIVEE YEEQMQKLAS KLMWLSLTSL GVSEEDIKWA
201: SANPDLNWAQ SALQLNHYPV CPEPDRAMGL AAHTDSTLLT ILHQNNTAGL QVFRDDLGWV TVPPVPDSLV VNVGDLFHIL SNGLFKSVLH RARVNQTRSR
301: LSVAFLWGPQ SDIKISPVPK LVSPVGSPLY RSVTWTEYLR TKATHFNEAL SMIKNDIDE
101: GSLFQLPVQR KLKAARSETG FSGYGVARIS SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNNYCDIVEE YEEQMQKLAS KLMWLSLTSL GVSEEDIKWA
201: SANPDLNWAQ SALQLNHYPV CPEPDRAMGL AAHTDSTLLT ILHQNNTAGL QVFRDDLGWV TVPPVPDSLV VNVGDLFHIL SNGLFKSVLH RARVNQTRSR
301: LSVAFLWGPQ SDIKISPVPK LVSPVGSPLY RSVTWTEYLR TKATHFNEAL SMIKNDIDE
001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
Arabidopsis Description
GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.