Factsheet for Os01t0177400-01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039634_P001	Maize	cytosol	77.84	75.39
TraesCS3B01G141800.1	Wheat	cytosol	73.78	73.98
HORVU3Hr1G022840.8	Barley	cytosol	74.32	73.14
EES00202	Sorghum	cytosol, peroxisome, plastid	76.49	72.75
TraesCS3A01G122600.1	Wheat	cytosol	72.7	72.7
TraesCS3D01G124500.1	Wheat	cytosol	72.7	72.7
TraesCS2B01G570900.1	Wheat	cytosol	63.78	62.93
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	61.35	61.35
TraesCS2D01G542100.1	Wheat	cytosol	59.73	59.25
TraesCS2B01G570800.2	Wheat	cytosol	64.86	58.68
HORVU2Hr1G118350.1	Barley	cytosol	58.38	57.29
Os05t0178100-01	Rice	plasma membrane	54.86	53.28
CDX87302	Canola	cytosol	11.08	53.25
GSMUA_Achr5P09790_001	Banana	cytosol	42.97	42.97
CDY39986	Canola	cytosol	14.32	42.4
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	42.16	41.49
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	39.46	41.13
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	39.19	40.62
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	40.0	40.55
PGSC0003DMT400014555	Potato	cytosol	38.65	40.17
Solyc03g119910.2.1	Tomato	cytosol	38.38	40.0
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	39.73	39.52
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	39.19	39.4
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	39.19	38.77
VIT_09s0002g05300.t01	Wine grape	cytosol	37.57	38.72
KRH61843	Soybean	cytosol, peroxisome, plastid	35.68	38.71
KRH09799	Soybean	cytosol, nucleus, peroxisome	36.76	38.53
CDY39663	Canola	cytosol, nucleus, peroxisome	37.03	38.16
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	37.03	38.16
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	36.76	37.99
CDY68965	Canola	cytosol, nucleus, peroxisome	36.76	37.99
CDY36572	Canola	cytosol, nucleus, peroxisome	36.76	37.88
KRH23520	Soybean	cytosol	35.95	37.78
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	36.49	37.71
CDX81720	Canola	cytosol, nucleus, peroxisome	36.49	37.71
KRH52518	Soybean	cytosol	35.14	37.46
AT1G80340.1	Thale cress	cytosol	34.86	37.18
Bra020909.1-P	Field mustard	cytosol	35.14	37.14
KRH05073	Soybean	cytosol	35.14	37.14
CDY31424	Canola	cytosol	34.86	36.86
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	35.41	36.59
AT4G21690.1	Thale cress	cytosol	34.32	36.39
CDY37589	Canola	cytosol, nucleus, peroxisome	35.14	36.31
CDX76441	Canola	cytosol	34.32	36.29
PGSC0003DMT400059595	Potato	cytosol	34.05	36.1
CDY38661	Canola	cytosol, nucleus, peroxisome	34.86	36.03
KRH44397	Soybean	cytosol	36.49	36.0
Bra008481.1-P	Field mustard	cytosol	33.78	35.61
CDY37588	Canola	cytosol, nucleus, peroxisome	33.78	35.61
KRH16040	Soybean	cytosol	33.24	35.45
KRH47509	Soybean	cytosol	35.95	35.19
Os04t0517600-00	Rice	cytosol, peroxisome	19.46	35.12
PGSC0003DMT400086139	Potato	cytosol	32.97	34.96
Solyc01g058250.1.1	Tomato	cytosol	32.43	34.48
CDY38660	Canola	cytosol	32.7	34.47
PGSC0003DMT400074744	Potato	cytosol	32.43	34.38
AT1G80330.1	Thale cress	cytosol	32.97	34.37
Solyc05g052740.1.1	Tomato	cytosol	32.16	34.1
PGSC0003DMT400044153	Potato	nucleus	25.68	32.31
CDX87303	Canola	cytosol	13.78	29.14

Protein Annotations

MapMan:11.6.1.6	Gene3D:2.60.120.330	ProteinID:BAF04100.1	ProteinID:BAS70691.1	InterPro:DIOX_N	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009685	GO:GO:0009686
GO:GO:0009719	GO:GO:0009740	GO:GO:0009987	GO:GO:0016491	GO:GO:0016707	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EnsemblPlantsGene:Os01g0177400	EnsemblPlants:Os01t0177400-01
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF245
UniProt:Q0JQ78	SUPFAM:SSF51197	UniParc:UPI00000AA19B	SEG:seg	:	:

Description

DWARF 18GA 3 beta-hydroxylase2, GA metabolism (Os01t0177400-01)

Coordinates

chr1:-:4003659..4004887

Molecular Weight (calculated)

40248.0 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.114

Length

370 amino acids

Sequence
(BLAST)

001: MPTPSHLKNP LCFDFRAARR VPETHAWPGL DDHPVVDGGG GGGEDAVPVV DVGAGDAAAR AAEQWGAFLL VGHGVPAALL SRVEERVARV FSLPASEKMR
101: AVRGPGEPCG YGSPPISSFF SKLMWSEGYT FSPSSLRSEL RRLWPKSGDD YLLFCDVMEE FHKEMRRLAD ELLRLFLRAL GLTGEEVAGV EAERRIGERM
201: TATVHLNWYP RCPEPRRALG LIAHTDSGFF TFVLQSLVPG LQLFRRGPDR WVAVPAVAGA FVVNVGDLFH ILTNGRFHSV YHRAVVNRDR DRVSLGYFLG
301: PPPDAEVAPL PEAVPAGRSP AYRAVTWPEY MAVRKKAFAT GGSALKMVST DAAAAADEHD DVAAAADVHA

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.