Factsheet for PGSC0003DMT400074744

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g058250.1.1	Tomato	cytosol	86.82	87.07
PGSC0003DMT400059595	Potato	cytosol	83.95	83.95
PGSC0003DMT400086139	Potato	cytosol	83.95	83.95
PGSC0003DMT400044153	Potato	nucleus	57.02	67.69
VIT_04s0008g04940.t01	Wine grape	cytosol, peroxisome, plastid	53.01	52.11
KRH05073	Soybean	cytosol	49.57	49.43
KRH61843	Soybean	cytosol, peroxisome, plastid	47.85	48.97
KRH52518	Soybean	cytosol	47.28	47.55
KRH16040	Soybean	cytosol	46.7	46.97
PGSC0003DMT400014555	Potato	cytosol	45.27	44.38
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	44.41	41.67
CDY31424	Canola	cytosol	40.11	40.0
GSMUA_Achr5P09790_001	Banana	cytosol	41.83	39.46
Bra020909.1-P	Field mustard	cytosol	39.54	39.43
CDX76441	Canola	cytosol	39.26	39.14
AT4G21690.1	Thale cress	cytosol	38.97	38.97
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	41.55	38.56
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	40.11	38.04
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	36.39	35.57
Zm00001d039634_P001	Maize	cytosol	35.82	32.72
TraesCS3B01G141800.1	Wheat	cytosol	34.38	32.52
Os01t0177400-01	Rice	golgi	34.38	32.43
TraesCS3A01G122600.1	Wheat	cytosol	34.38	32.43
HORVU3Hr1G022840.8	Barley	cytosol	34.67	32.18
TraesCS3D01G124500.1	Wheat	cytosol	33.81	31.89
EES00202	Sorghum	cytosol, peroxisome, plastid	34.96	31.36
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	32.38	30.54
TraesCS2D01G542100.1	Wheat	cytosol	31.81	29.76
Zm00001d037627_P001	Maize	cytosol	31.81	29.68
Os05t0178100-01	Rice	plasma membrane	32.09	29.4
TraesCS2B01G570900.1	Wheat	cytosol	31.52	29.33
HORVU2Hr1G118350.1	Barley	cytosol	30.95	28.65
TraesCS2B01G570800.2	Wheat	cytosol	31.81	27.14
KXG21453	Sorghum	cytosol, peroxisome, plastid	30.95	26.28
Os04t0517600-00	Rice	cytosol, peroxisome	10.6	18.05

Protein Annotations

EntrezGene:102596258	MapMan:11.6.1.6	Gene3D:2.60.120.330	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1CU41	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400029063	PGSC:PGSC0003DMG400029063	EnsemblPlants:PGSC0003DMT400074744	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF197	SUPFAM:SSF51197	UniParc:UPI000295951C	RefSeq:XP_006338004.1	:	:

Description

Gibberellin 3beta-hydroxylase3 [Source:PGSC_GENE;Acc:PGSC0003DMG400029063]

Coordinates

chr1:-:37869508..37871058

Molecular Weight (calculated)

39666.8 Da

IEP (calculated)

7.740

GRAVY (calculated)

-0.173

Length

349 amino acids

Sequence
(BLAST)

001: MATSTLEEAY KENPLSLQHI LPIDFQSIQE VPNSHLWPKI NNVLTSHNDK NPNVPIIDLL APNVVELMGH ACKTWGIFQV VNHGVSLELF DEVEYQARRF
101: FALPAEQKVK VMRSTSGATG YGTARITPFF SKFMWHEGFT IMDSPLDHAK KLWPHDYHKF CDVMENYQKK MKVLSFQLCL FILNYLQPSQ DQHSINSFEF
201: AGALQLNSYP CCPNPNHALG LAPHTDSLFL TILHQTNNTK GLQILKKDQG WTSIAPVSND ALIVNVGDLL HILSNGEFPS VYHRVLVDQT KHRVSLAYFF
301: GPQVDSMISP LVSSKDNDGV VLKYRNVKVK EYLGLKAKHL EKVFSMIRF

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.