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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 3
  • peroxisome 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 cytosol: 25341533
nucleus: 25341533
gfp PMID: 25341533 doi
Y Chen, M Hou, L Liu, S Wu, Y Shen, K Ishiyama, M Kobayashi, DR McCarty, BC Tan
Chinese University of Hong Kong, Shatin, New Territories 852, Hong Kong, Experimental Plant Division, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan, Horticultural Sciences Department, University of Florida, Gainesville, Florida 32611, Horticultural Sciences Department, University of Florida, Gainesville, Florida 32611 USA, Institute of Plant Molecular Biology and Agricultural Biotechnology, State Key Laboratory of Agrobiotechnology, Chinese University of Hong Kong, Shatin, New Territories 852, Hong Kong, Institute of Plant Molecular Biology and Agricultural Biotechnology, State Key Laboratory of Agrobiotechnology, Chinese University of Hong Kong, Shatin, New Territories 852, Hong Kong (Y.C., M.H., Y.S., B.-C.T.);Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan, Shandong 250100, People's Republic of China (M.H., B.-C.T.);Horticultural Sciences Department, University of Florida, Gainesville, Florida 32611 (L.L., S.W., D.R.M.); andExperimental Plant Division, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan (K.I., M.K.) bctan@sdu.edu.cn., Institute of Plant Molecular Biology and Agricultural Biotechnology, State Key Laboratory of Agrobiotechnology, Chinese University of Hong Kong, Shatin, New Territories 852, Hong Kong (Y.C., M.H., Y.S., B.-C.T.);Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan, Shandong 250100, People's Republic of China (M.H., B.-C.T.);Horticultural Sciences Department, University of Florida, Gainesville, Florida 32611 (L.L., S.W., D.R.M.); andExperimental Plant Division, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan (K.I., M.K.)., Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan, Shandong 250100, People's Republic of China, School of Life Sciences, Shandong University, Jinan, Shandong 250100, People's Republic of China
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES00202 Sorghum cytosol, peroxisome, plastid 88.22 86.63
TraesCS3B01G141800.1 Wheat cytosol 76.7 79.4
TraesCS3D01G124500.1 Wheat cytosol 76.7 79.19
HORVU3Hr1G022840.8 Barley cytosol 77.75 78.99
TraesCS3A01G122600.1 Wheat cytosol 76.18 78.65
Os01t0177400-01 Rice golgi 75.39 77.84
TraesCS2A01G540400.1 Wheat cytosol, endoplasmic reticulum, peroxisome 62.83 64.86
TraesCS2B01G570900.1 Wheat cytosol 63.09 64.27
TraesCS2D01G542100.1 Wheat cytosol 60.21 61.66
TraesCS2B01G570800.2 Wheat cytosol 65.18 60.88
HORVU2Hr1G118350.1 Barley cytosol 58.38 59.15
Zm00001d037627_P001 Maize cytosol 52.88 54.01
CDX87302 Canola cytosol 10.47 51.95
GSMUA_Achr5P09790_001 Banana cytosol 42.67 44.05
GSMUA_Achr4P08970_001 Banana cytosol, nucleus, peroxisome 40.84 42.39
GSMUA_Achr7P13240_001 Banana cytosol, nucleus, peroxisome 41.62 42.29
VIT_04s0008g04940.t01 Wine grape cytosol, peroxisome, plastid 39.27 42.25
CDY39986 Canola cytosol 13.61 41.6
GSMUA_AchrUn_... Banana cytosol, peroxisome, plastid 38.74 41.46
VIT_09s0002g05300.t01 Wine grape cytosol 38.48 40.95
VIT_09s0002g05270.t01 Wine grape cytosol, nucleus, peroxisome 39.01 40.82
PGSC0003DMT400014555 Potato cytosol 37.17 39.89
Solyc03g119910.2.1 Tomato cytosol 36.91 39.72
KRH09799 Soybean cytosol, nucleus, peroxisome 36.65 39.66
PGSC0003DMT400042582 Potato cytosol, nucleus, peroxisome 38.48 39.52
Solyc06g066820.2.1 Tomato cytosol, peroxisome, plastid 38.48 39.3
KRH23520 Soybean cytosol 36.13 39.2
KRH61843 Soybean cytosol, peroxisome, plastid 34.82 39.0
CDY68965 Canola cytosol, nucleus, peroxisome 36.39 38.83
Bra026757.1-P Field mustard cytosol, nucleus, peroxisome 36.39 38.83
CDX81720 Canola cytosol, nucleus, peroxisome 36.13 38.55
AT1G15550.1 Thale cress cytosol, nucleus, peroxisome 36.13 38.55
CDY39663 Canola cytosol, nucleus, peroxisome 36.13 38.44
Bra026122.1-P Field mustard cytosol, nucleus, peroxisome 36.13 38.44
CDY36572 Canola cytosol, nucleus, peroxisome 35.86 38.16
AT1G80340.1 Thale cress cytosol 34.55 38.04
Bra008480.1-P Field mustard cytosol, nucleus, peroxisome 35.6 37.99
CDY37589 Canola cytosol, nucleus, peroxisome 35.6 37.99
KRH05073 Soybean cytosol 34.55 37.71
CDY38661 Canola cytosol, nucleus, peroxisome 35.34 37.71
KRH52518 Soybean cytosol 34.03 37.46
KRH44397 Soybean cytosol 36.65 37.33
Bra008481.1-P Field mustard cytosol 34.03 37.04
CDY37588 Canola cytosol, nucleus, peroxisome 34.03 37.04
PGSC0003DMT400059595 Potato cytosol 33.77 36.96
KRH16040 Soybean cytosol 33.51 36.89
KRH47509 Soybean cytosol 36.13 36.51
CDY38660 Canola cytosol 33.25 36.18
CDY31424 Canola cytosol 32.98 36.0
Bra020909.1-P Field mustard cytosol 32.98 36.0
PGSC0003DMT400074744 Potato cytosol 32.72 35.82
Solyc01g058250.1.1 Tomato cytosol 32.46 35.63
PGSC0003DMT400086139 Potato cytosol 32.46 35.53
CDX76441 Canola cytosol 32.46 35.43
Solyc05g052740.1.1 Tomato cytosol 32.2 35.24
AT4G21690.1 Thale cress cytosol 31.94 34.96
AT1G80330.1 Thale cress cytosol 32.2 34.65
PGSC0003DMT400044153 Potato nucleus 25.92 33.67
CDX87303 Canola cytosol 14.92 32.57
Protein Annotations
EntrezGene:101202726MapMan:11.6.1.6Gene3D:2.60.120.330ProteinID:AFS50158.1InterPro:DIOX_NGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0046872
GO:GO:0055114InterPro:IPNS-likeInterPro:IPR005123InterPro:IPR027443UniProt:J9Z485EMBL:JX307638
ProteinID:ONM29559.1InterPro:Oxoglu/Fe-dep_dioxygenasePFAM:PF03171PFAM:PF14226PFscan:PS51471PANTHER:PTHR10209
PANTHER:PTHR10209:SF245SUPFAM:SSF51197UniParc:UPI000220785DEnsemblPlantsGene:Zm00001d039634EnsemblPlants:Zm00001d039634_P001EnsemblPlants:Zm00001d039634_T001
SEG:seg:::::
Description
dwarf plant1 dwarf plant1
Coordinates
chr3:+:9745656..9748061
Molecular Weight (calculated)
41512.7 Da
IEP (calculated)
7.075
GRAVY (calculated)
-0.086
Length
382 amino acids
Sequence
(BLAST)
001: MPTPSHLNKN PRYLDFRAAR RVPESHAWPG LHDHPVVDGG APGPDAVPVV DLGAADPAPA PAAAVARAAE QWGAFLLTGH GVPADLLARV EDRIATMFAL
101: PADDKMRAVR GPGDACGYGS PPISSFFSKC MWSEGYTFSP ASLRADLRKL WPKAGDDYTS FCDVMEEFHK HMRALADKLL ELFLMALGLT DEQASAVEAE
201: RRIAETMTAT MHLNWYPRCP DPRRALGLIA HTDSGFFTFV MQSLVPGLQL FRHAPDRWVA VPAVPGAFVV NVGDLFHILT NGRFHSVYHR AVVNRDLDRI
301: SLGYFLGPPP HAKVAPLREA VPPGRAPAYR AVTWPEYMGV RKKAFTTGAS ALKMVALAAA ADLDDDGDAA VVHQQQQLVV SS
Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)
001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
Arabidopsis Description
GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.