Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026757.1-P | Field mustard | cytosol, nucleus, peroxisome | 87.15 | 87.15 |
| CDY68965 | Canola | cytosol, nucleus, peroxisome | 87.15 | 87.15 |
| CDX81720 | Canola | cytosol, nucleus, peroxisome | 86.87 | 86.87 |
| Bra026122.1-P | Field mustard | cytosol, nucleus, peroxisome | 86.59 | 86.35 |
| CDY39663 | Canola | cytosol, nucleus, peroxisome | 86.59 | 86.35 |
| CDY36572 | Canola | cytosol, nucleus, peroxisome | 86.31 | 86.07 |
| AT1G80340.1 | Thale cress | cytosol | 70.39 | 72.62 |
| KRH09799 | Soybean | cytosol, nucleus, peroxisome | 57.54 | 58.36 |
| KRH23520 | Soybean | cytosol | 57.26 | 58.24 |
| VIT_09s0002g05270.t01 | Wine grape | cytosol, nucleus, peroxisome | 57.26 | 56.16 |
| KRH44397 | Soybean | cytosol | 58.66 | 56.0 |
| PGSC0003DMT400014555 | Potato | cytosol | 55.03 | 55.34 |
| Solyc03g119910.2.1 | Tomato | cytosol | 54.75 | 55.21 |
| KRH47509 | Soybean | cytosol | 57.26 | 54.23 |
| AT1G80330.1 | Thale cress | cytosol | 53.07 | 53.52 |
| Solyc06g066820.2.1 | Tomato | cytosol, peroxisome, plastid | 55.31 | 52.94 |
| PGSC0003DMT400042582 | Potato | cytosol, nucleus, peroxisome | 54.47 | 52.42 |
| VIT_09s0002g05300.t01 | Wine grape | cytosol | 51.96 | 51.81 |
| GSMUA_Achr5P09790_001 | Banana | cytosol | 49.16 | 47.57 |
| GSMUA_Achr7P13240_001 | Banana | cytosol, nucleus, peroxisome | 47.77 | 45.48 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plastid | 43.3 | 43.42 |
| GSMUA_Achr4P08970_001 | Banana | cytosol, nucleus, peroxisome | 44.41 | 43.21 |
| AT4G21690.1 | Thale cress | cytosol | 40.78 | 41.83 |
| Os01t0177400-01 | Rice | golgi | 37.71 | 36.49 |
| TraesCS3D01G124500.1 | Wheat | cytosol | 37.71 | 36.49 |
| TraesCS3B01G141800.1 | Wheat | cytosol | 37.43 | 36.31 |
| TraesCS3A01G122600.1 | Wheat | cytosol | 37.43 | 36.22 |
| Zm00001d039634_P001 | Maize | cytosol | 38.55 | 36.13 |
| HORVU3Hr1G022840.8 | Barley | cytosol | 37.43 | 35.64 |
| EES00202 | Sorghum | cytosol, peroxisome, plastid | 37.99 | 34.96 |
| TraesCS2A01G540400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 35.2 | 34.05 |
| TraesCS2B01G570900.1 | Wheat | cytosol | 35.2 | 33.6 |
| HORVU2Hr1G118350.1 | Barley | cytosol | 35.2 | 33.42 |
| TraesCS2D01G542100.1 | Wheat | cytosol | 34.36 | 32.98 |
| Os05t0178100-01 | Rice | plasma membrane | 34.64 | 32.55 |
| Zm00001d037627_P001 | Maize | cytosol | 32.12 | 30.75 |
| TraesCS2B01G570800.2 | Wheat | cytosol | 34.92 | 30.56 |
| KXG21453 | Sorghum | cytosol, peroxisome, plastid | 32.68 | 28.47 |
| Os04t0517600-00 | Rice | cytosol, peroxisome | 13.13 | 22.93 |
Protein Annotations
| MapMan:11.6.1.6 | Gene3D:2.60.120.330 | EntrezGene:838125 | ProteinID:AAF71980.1 | ProteinID:AEE29335.1 | EMBL:AK227590 |
| ArrayExpress:AT1G15550 | EnsemblPlantsGene:AT1G15550 | RefSeq:AT1G15550 | TAIR:AT1G15550 | RefSeq:AT1G15550-TAIR-G | EnsemblPlants:AT1G15550.1 |
| TAIR:AT1G15550.1 | EMBL:BT005827 | InterPro:DIOX_N | Symbol:GA4 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009639 | GO:GO:0009686 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009740 | GO:GO:0009987 |
| GO:GO:0010114 | GO:GO:0016491 | GO:GO:0016707 | GO:GO:0046872 | GO:GO:0051213 | GO:GO:0055114 |
| InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | EMBL:L37126 | RefSeq:NP_173008.1 | InterPro:Oxoglu/Fe-dep_dioxygenase |
| PFAM:PF03171 | PFAM:PF14226 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0003011 | PO:PO:0004714 | PO:PO:0004723 |
| PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009064 | PO:PO:0009067 | PO:PO:0019018 | PO:PO:0020001 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0020141 | PO:PO:0020148 |
| PO:PO:0025022 | PO:PO:0025281 | PO:PO:0025374 | PRINTS:PR00682 | PFscan:PS51471 | PANTHER:PTHR10209 |
| PANTHER:PTHR10209:SF95 | UniProt:Q39103 | SUPFAM:SSF51197 | UniParc:UPI000004825F | : | : |
Description
GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
Coordinates
chr1:-:5344388..5346342
Molecular Weight (calculated)
40164.0 Da
IEP (calculated)
6.838
GRAVY (calculated)
-0.218
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.