CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	100.0	100.0
CDX81720	Canola	cytosol, nucleus, peroxisome	97.49	97.49
CDY39663	Canola	cytosol, nucleus, peroxisome	87.99	87.74
CDY36572	Canola	cytosol, nucleus, peroxisome	87.71	87.47
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	87.15	87.15
CDX87302	Canola	cytosol	16.2	75.32
CDY39986	Canola	cytosol	24.3	69.6
CDY37589	Canola	cytosol, nucleus, peroxisome	67.88	67.88
CDY38661	Canola	cytosol, nucleus, peroxisome	67.6	67.6
CDX87303	Canola	cytosol	29.61	60.57
KRH23520	Soybean	cytosol	58.1	59.09
KRH09799	Soybean	cytosol, nucleus, peroxisome	58.1	58.92
PGSC0003DMT400014555	Potato	cytosol	56.15	56.46
Solyc03g119910.2.1	Tomato	cytosol	55.87	56.34
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	57.26	56.16
KRH44397	Soybean	cytosol	58.1	55.47
CDY37588	Canola	cytosol, nucleus, peroxisome	53.63	54.7
CDY38660	Canola	cytosol	53.35	54.42
KRH47509	Soybean	cytosol	57.26	54.23
Solyc06g066820.2.1	Tomato	cytosol, peroxisome, plastid	55.31	52.94
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	54.19	52.15
VIT_09s0002g05300.t01	Wine grape	cytosol	51.68	51.53
GSMUA_Achr5P09790_001	Banana	cytosol	48.6	47.03
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	47.77	45.48
CDY31424	Canola	cytosol	43.58	44.57
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	43.85	43.98
CDX76441	Canola	cytosol	42.46	43.43
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	44.13	42.93
TraesCS3A01G122600.1	Wheat	cytosol	37.99	36.76
Os01t0177400-01	Rice	golgi	37.99	36.76
TraesCS3D01G124500.1	Wheat	cytosol	37.71	36.49
Zm00001d039634_P001	Maize	cytosol	38.83	36.39
TraesCS3B01G141800.1	Wheat	cytosol	37.15	36.04
HORVU3Hr1G022840.8	Barley	cytosol	37.71	35.9
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	36.59	35.41
EES00202	Sorghum	cytosol, peroxisome, plastid	37.99	34.96
TraesCS2D01G542100.1	Wheat	cytosol	35.75	34.32
HORVU2Hr1G118350.1	Barley	cytosol	36.03	34.22
TraesCS2B01G570900.1	Wheat	cytosol	35.75	34.13
Os05t0178100-01	Rice	plasma membrane	34.92	32.81
TraesCS2B01G570800.2	Wheat	cytosol	35.47	31.05
Zm00001d037627_P001	Maize	cytosol	32.4	31.02
KXG21453	Sorghum	cytosol, peroxisome, plastid	32.4	28.22
Os04t0517600-00	Rice	cytosol, peroxisome	13.13	22.93

Protein Annotations

MapMan:11.6.1.6	Gene3D:2.60.120.330	GO:A0A078JRB3	UniProt:A0A078JRB3	EnsemblPlants:CDY68965	ProteinID:CDY68965
ProteinID:CDY68965.1	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00081498001
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF95	SUPFAM:SSF51197	UniParc:UPI0002542CBB

Description

BnaA09g57140DBnaA09g57140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRB3]

Coordinates

chrLK038360:-:2152..3755

Molecular Weight (calculated)

40268.0 Da

IEP (calculated)

7.446

GRAVY (calculated)

-0.290

Length

358 amino acids

Sequence
(BLAST)

001: MPTVLTDVFR GHPIHLPHTH QPDFTSLSEL PDSYTWTSKD DPLFTAPPSP PDAGESIPLI DLNHPDAANQ IGRACRTWGA FQIANHGVPL ELLQGIEFLT
101: GSLFQLPVQR KLKAARSDTG FSGYGVARIS SFFNKKMWSE GFTITGSPLN DFRKLWPQLH LNYCDIVEQY EEQMQKLASK LMWLSLNSLG VTEEDIKWAT
201: VSSDLNWAQS ALQLNHYPVC PEPDRAMGLA PHTDSTLLTI LYQNNTAGLQ VFRDDFGWVT VPPVPGSLVV NVGDLFHILS NGLFKSVIHR ARVNQTRPRL
301: SVAFLWGPRS DTKISPVPKL VSPDESPLYR SVTWTEYLRT KATHFNKALS MIRNHREK

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.