Factsheet for Solyc06g066820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042582	Potato	cytosol, nucleus, peroxisome	86.1	86.56
Solyc03g119910.2.1	Tomato	cytosol	71.93	75.77
VIT_09s0002g05270.t01	Wine grape	cytosol, nucleus, peroxisome	65.78	67.4
KRH23520	Soybean	cytosol	60.16	63.92
CDX87302	Canola	cytosol	13.1	63.64
KRH09799	Soybean	cytosol, nucleus, peroxisome	59.63	63.17
VIT_09s0002g05300.t01	Wine grape	cytosol	56.15	58.5
KRH44397	Soybean	cytosol	58.56	58.4
CDY39986	Canola	cytosol	19.25	57.6
KRH47509	Soybean	cytosol	57.75	57.14
Bra026757.1-P	Field mustard	cytosol, nucleus, peroxisome	52.94	55.31
AT1G15550.1	Thale cress	cytosol, nucleus, peroxisome	52.94	55.31
CDY68965	Canola	cytosol, nucleus, peroxisome	52.94	55.31
AT1G80330.1	Thale cress	cytosol	52.14	54.93
CDY39663	Canola	cytosol, nucleus, peroxisome	52.67	54.87
Bra026122.1-P	Field mustard	cytosol, nucleus, peroxisome	52.67	54.87
CDX81720	Canola	cytosol, nucleus, peroxisome	52.41	54.75
CDY36572	Canola	cytosol, nucleus, peroxisome	52.41	54.6
AT1G80340.1	Thale cress	cytosol	50.53	54.47
Bra008481.1-P	Field mustard	cytosol	50.8	54.13
CDY37588	Canola	cytosol, nucleus, peroxisome	50.0	53.28
CDY38661	Canola	cytosol, nucleus, peroxisome	50.8	53.07
CDY38660	Canola	cytosol	49.73	52.99
Bra008480.1-P	Field mustard	cytosol, nucleus, peroxisome	50.27	52.51
CDY37589	Canola	cytosol, nucleus, peroxisome	50.27	52.51
GSMUA_Achr5P09790_001	Banana	cytosol	50.8	51.35
GSMUA_Achr7P13240_001	Banana	cytosol, nucleus, peroxisome	49.2	48.94
GSMUA_Achr4P08970_001	Banana	cytosol, nucleus, peroxisome	46.26	47.01
Solyc01g058250.1.1	Tomato	cytosol	43.32	46.55
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	42.51	44.54
Solyc05g052740.1.1	Tomato	cytosol	41.44	44.41
CDX87303	Canola	cytosol	20.59	44.0
TraesCS3A01G122600.1	Wheat	cytosol	39.3	39.73
TraesCS3B01G141800.1	Wheat	cytosol	39.04	39.57
TraesCS3D01G124500.1	Wheat	cytosol	38.77	39.19
Os01t0177400-01	Rice	golgi	38.77	39.19
Zm00001d039634_P001	Maize	cytosol	39.3	38.48
HORVU3Hr1G022840.8	Barley	cytosol	38.5	38.3
EES00202	Sorghum	cytosol, peroxisome, plastid	38.5	37.02
TraesCS2A01G540400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	35.56	35.95
TraesCS2B01G570900.1	Wheat	cytosol	35.83	35.73
TraesCS2D01G542100.1	Wheat	cytosol	35.56	35.66
Zm00001d037627_P001	Maize	cytosol	35.03	35.03
HORVU2Hr1G118350.1	Barley	cytosol	34.76	34.48
TraesCS2B01G570800.2	Wheat	cytosol	36.36	33.25
KXG21453	Sorghum	cytosol, peroxisome, plastid	35.56	32.36
Os05t0178100-01	Rice	plasma membrane	32.62	32.02
Os04t0517600-00	Rice	cytosol, peroxisome	13.9	25.37

Protein Annotations

MapMan:11.6.1.6	Gene3D:2.60.120.330	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009686	GO:GO:0009719	GO:GO:0009740
GO:GO:0009987	GO:GO:0016491	GO:GO:0016707	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:K4C7V6	EMBL:KY357881	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF95	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc06g066820.2
EnsemblPlants:Solyc06g066820.2.1	UniParc:UPI0002765F84	SEG:seg	:	:	:

Description

Gibberellin 3-beta-hydroxylase 1 [Source:UniProtKB/TrEMBL;Acc:K4C7V6]

Coordinates

chr6:+:42017428..42020038

Molecular Weight (calculated)

41529.4 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.364

Length

374 amino acids

Sequence
(BLAST)

001: MPSRISDSCR PHHSQKHFDL NSIKELPESH AWTSSNDHYT QENSCNFESI PVIDLDNNNN NNNNNNILDH IGHACKKWGA FQIINHSISE KLLQDIEVAG
101: KTLFSLPMQQ KLKAARSPDG VTGYGAARIS SFFSKLMWSE GFTIVGSPIE HARQLWPKDY NKFCEVIEEY EKEMEKLAGR LMWLILGSLG ITKDDVKWAV
201: GPKGETKEGC AALQLNSYPA CPDPGRAMGL AAHTDSTILT ILHQNNTSGL QVYQEGNGWV TVPPIPGALV VNIGDLLHIL SNGSYPSVLH RAVVNRTRYR
301: LSVAYLYGPP SGVRVSPLSK LVDHRHPPLY RAVTWSEYLG TKAKYFDKAL SSVRLCVPLN GFTDAKDHKG VQVG

Best Arabidopsis Sequence Match ( AT1G15550.1 )
(BLAST)

001: MPAMLTDVFR GHPIHLPHSH IPDFTSLREL PDSYKWTPKD DLLFSAAPSP PATGENIPLI DLDHPDATNQ IGHACRTWGA FQISNHGVPL GLLQDIEFLT
101: GSLFGLPVQR KLKSARSETG VSGYGVARIA SFFNKQMWSE GFTITGSPLN DFRKLWPQHH LNYCDIVEEY EEHMKKLASK LMWLALNSLG VSEEDIEWAS
201: LSSDLNWAQA ALQLNHYPVC PEPDRAMGLA AHTDSTLLTI LYQNNTAGLQ VFRDDLGWVT VPPFPGSLVV NVGDLFHILS NGLFKSVLHR ARVNQTRARL
301: SVAFLWGPQS DIKISPVPKL VSPVESPLYQ SVTWKEYLRT KATHFNKALS MIRNHREE

Arabidopsis Description

GA3OX1Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.