Factsheet for GSMUA_Achr11P06930_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P02490_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	GSMUA_Achr7P02490_001	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93872	Sorghum	plastid	54.2	58.27
CDX97709	Canola	plastid	54.2	58.05
CDY30115	Canola	plastid	54.2	58.05
Os03t0586500-01	Rice	plastid	54.9	57.93
VIT_09s0002g06980.t01	Wine grape	plastid	56.99	57.8
Zm00001d033098_P001	Maize	plastid	53.85	57.68
Bra027204.1-P	Field mustard	plastid	53.85	57.68
AT3G15840.1	Thale cress	plastid	53.85	57.46
TraesCS7B01G289200.1	Wheat	plastid	53.5	57.09
Solyc12g042770.1.1	Tomato	nucleus, plastid	55.24	57.04
TraesCS7D01G382900.1	Wheat	plastid	53.15	56.72
Zm00001d013781_P001	Maize	plastid	53.15	56.51
PGSC0003DMT400073694	Potato	plastid	54.55	56.32
TraesCS7A01G386300.1	Wheat	plastid	53.15	56.3
KRH47439	Soybean	nucleus, plastid	53.5	56.25
CDY58466	Canola	plastid	52.8	56.13
KRH44469	Soybean	nucleus, plastid	54.2	55.96
CDX75847	Canola	plastid	52.45	55.76
Bra001608.1-P	Field mustard	plastid	52.45	55.76

Protein Annotations

EnsemblPlants:GSMUA_Achr11P06930_001	EnsemblPlants:GSMUA_Achr11T06930_001	EnsemblPlantsGene:GSMUA_Achr11G06930_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0010478	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9
UniParc:UPI0002960958	UniProt:M0RQ23	MapMan:35.2	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G06930_001]

Coordinates

chr11:-:5443386..5446709

Molecular Weight (calculated)

31403.3 Da

IEP (calculated)

5.383

GRAVY (calculated)

-0.294

Length

286 amino acids

Sequence
(BLAST)

001: MAMASRFSPV CLPSPSSLFR PDRHGSASMP PPLASTPHDF AGACSMIYRH KQRFVRTIRE ASVAAAPTVE ETKEYTLPTW AEFELGMAPV FWKTMNGLPP
101: TSGENLTLFY NPVASNLVPN NEYGVAFNGG FNQPIMCGGE PRVMTKRNRG KADPPIFSIK IRVPKHAVNL IFSFTNGAEW DGPYRLKFQT MKMWRNKPLS
201: FFNEGLAQEL SVEGACERAI FPDANNFVAS CAIGNIYTEG GNSCKLNLVQ GCMDPDSPLY NPLADVDDGS CPLDSDSEEE QCASPL

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.