Factsheet for PGSC0003DMT400073694

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019417
PGSC0003DMT400060984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	PGSC0003DMT400019417	AT1G60080.1	21798944
AT3G15840.1	PGSC0003DMT400060984	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042770.1.1	Tomato	nucleus, plastid	92.78	92.78
CDY58466	Canola	plastid	64.26	66.17
Bra001608.1-P	Field mustard	plastid	63.9	65.8
VIT_09s0002g06980.t01	Wine grape	plastid	66.79	65.6
CDX75847	Canola	plastid	63.54	65.43
CDX97709	Canola	plastid	62.82	65.17
Bra027204.1-P	Field mustard	plastid	62.45	64.79
CDY30115	Canola	plastid	62.45	64.79
AT3G15840.1	Thale cress	plastid	62.45	64.55
KRH47439	Soybean	nucleus, plastid	61.37	62.5
KRH44469	Soybean	nucleus, plastid	60.65	60.65
Zm00001d033098_P001	Maize	plastid	54.15	56.18
Os03t0586500-01	Rice	plastid	54.87	56.09
EER93872	Sorghum	plastid	53.79	56.02
Zm00001d013781_P001	Maize	plastid	53.07	54.65
GSMUA_Achr11P...	Banana	plastid	56.32	54.55
TraesCS7A01G386300.1	Wheat	plastid	53.07	54.44
TraesCS7B01G289200.1	Wheat	plastid	52.35	54.1
TraesCS7D01G382900.1	Wheat	plastid	52.35	54.1

Protein Annotations

EntrezGene:102579625	MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0010478	UniProt:M1CSH3	EnsemblPlantsGene:PGSC0003DMG402028626	PGSC:PGSC0003DMG402028626
EnsemblPlants:PGSC0003DMT400073694	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9	UniParc:UPI0002956148	RefSeq:XP_006346596.1	SEG:seg

Description

Chloroplast post-illumination chlorophyll fluorescence increase protein [Source:PGSC_GENE;Acc:PGSC0003DMG402028626]

Coordinates

chr12:-:49750094..49753157

Molecular Weight (calculated)

30238.9 Da

IEP (calculated)

6.744

GRAVY (calculated)

-0.296

Length

277 amino acids

Sequence
(BLAST)

001: MAAASTSPSL FSATRSASNT NASPSVSNIY ATSFMGTHMR RYHPATRKLV RISKGIVAAA VATSPAEEIK EYALPSWAKF DLGKSPVYWK TMNGLPPTAG
101: ERLKLFYNPA ANNMVPNEEF GIAFNGGFNQ PIMCGGEPRI MLQKIRGKAD PPIYTIQLCI PKHALSLIFS FTNGTEWDGP YRLQFQVPKA WRNKPTEFFT
201: EGLARELSQD GACDRAIFPD SSILITRCAM VGNLNVDGGD RCNLDLVPGC IDPNSPEYNP LANVDDGSCP PYSDSEE

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.