Factsheet for TraesCS7A01G386300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G239300.1
TraesCS4B01G075600.1
TraesCS4D01G074300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	TraesCS4A01G239300.1	AT1G60080.1	21798944
AT3G15840.1	TraesCS4B01G075600.1	AT1G60080.1	21798944
AT3G15840.1	TraesCS4D01G074300.1	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G382900.1	Wheat	plastid	94.44	95.15
TraesCS7B01G289200.1	Wheat	plastid	93.7	94.4
Os03t0586500-01	Rice	plastid	75.19	74.91
Zm00001d033098_P001	Maize	plastid	73.33	74.16
EER93872	Sorghum	plastid	71.11	72.18
Zm00001d013781_P001	Maize	plastid	69.26	69.52
CDX97709	Canola	plastid	52.59	53.18
CDY30115	Canola	plastid	52.59	53.18
GSMUA_Achr11P...	Banana	plastid	56.3	53.15
PGSC0003DMT400073694	Potato	plastid	54.44	53.07
Bra027204.1-P	Field mustard	plastid	52.22	52.81
VIT_09s0002g06980.t01	Wine grape	plastid	54.81	52.48
Bra001608.1-P	Field mustard	plastid	52.22	52.42
Solyc12g042770.1.1	Tomato	nucleus, plastid	53.7	52.35
CDY58466	Canola	plastid	51.85	52.04
CDX75847	Canola	plastid	51.85	52.04
AT3G15840.1	Thale cress	plastid	51.11	51.49
KRH47439	Soybean	nucleus, plastid	50.0	49.63
KRH44469	Soybean	nucleus, plastid	50.74	49.46

Protein Annotations

EnsemblPlants:TraesCS7A01G386300.1	EnsemblPlantsGene:TraesCS7A01G386300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0010478	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:562001758..562003387

Molecular Weight (calculated)

29127.6 Da

IEP (calculated)

5.787

GRAVY (calculated)

-0.231

Length

270 amino acids

Sequence
(BLAST)

001: MATISSCSRL CGGGGGSSTA FHRRRSRPAR AAVVTCRRFS AVVRAAAAAS ATAAAPVSVV PQSKEVKLPT WAEFELGKAP VYWKTTNGLP PAPGEGLKIF
101: YNPGTSKLTP NEQFGIAFNG GFNQPIMCGG EPRQMTLQER GKACPPIYTI RIRVPQHAMS LVFSFTNGNE WDGAYTLKFK VPKPWLDKPL SFFNEGLADE
201: LNMEGACDRA IFPDENIVIT SCDIGGFYEE GGDRCKLDIV SGCMDPTSHM FDPLATIDDG SCPLDSDTEE

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.