CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1
mitochondrion 2
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15299

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	EES15299	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033098_P001	Maize	plastid	84.59	84.27
Zm00001d013781_P001	Maize	plastid	83.83	82.9
Os03t0586500-01	Rice	plastid	75.19	73.8
TraesCS7D01G382900.1	Wheat	plastid	72.93	72.39
TraesCS7B01G289200.1	Wheat	plastid	72.18	71.64
TraesCS7A01G386300.1	Wheat	plastid	72.18	71.11
CDX97709	Canola	plastid	56.02	55.81
CDY30115	Canola	plastid	56.02	55.81
Bra027204.1-P	Field mustard	plastid	55.64	55.43
Bra001608.1-P	Field mustard	plastid	54.89	54.28
GSMUA_Achr11P...	Banana	plastid	58.27	54.2
CDY58466	Canola	plastid	54.51	53.9
PGSC0003DMT400073694	Potato	plastid	56.02	53.79
CDX75847	Canola	plastid	54.14	53.53
AT3G15840.1	Thale cress	plastid	53.38	52.99
Solyc12g042770.1.1	Tomato	nucleus, plastid	54.89	52.71
KRH44469	Soybean	nucleus, plastid	54.14	51.99
KRH47439	Soybean	nucleus, plastid	53.01	51.84
VIT_09s0002g06980.t01	Wine grape	plastid	54.89	51.77

Protein Annotations

MapMan:35.2	EntrezGene:8064544	UniProt:C5WU61	EnsemblPlants:EER93872	ProteinID:EER93872	ProteinID:EER93872.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987
GO:GO:0010478	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9	EnsemblPlantsGene:SORBI_3001G179100	unigene:Sbi.14413	UniParc:UPI0001A82621
RefSeq:XP_002466874.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:15159551..15161682

Molecular Weight (calculated)

28368.4 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.209

Length

266 amino acids

Sequence
(BLAST)

001: MATLSSCSRL SSGTGAAAIH HRQPTRAGVV VVTSRRSSSA SVRAAAAATA APAAVEQQDK GVSLPTWAEF ELGRAPVFWK TANGLPPSPG EGLTLFYNPA
101: ATKMAPNDVF GVAFSGGFNQ PIMCGGEPRQ MTLQVRGKAD PPIYTIRIRV PQHAISLIFS FTNGAEWDGP YTLKFRVPKP WQNKPLSFFN EGLADELNME
201: GACDRAIYPD ENIAITSCAM DGYLEEGGDR CKLDIVSGCM DPGSDMFDPL ATVDDGSCPL ESDSEE

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.