Factsheet for VIT_09s0002g06980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g08550.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	VIT_08s0007g08550.t01	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47439	Soybean	nucleus, plastid	68.09	70.59
KRH44469	Soybean	nucleus, plastid	69.15	70.4
Solyc12g042770.1.1	Tomato	nucleus, plastid	67.38	68.59
CDY58466	Canola	plastid	64.18	67.29
AT3G15840.1	Thale cress	plastid	63.83	67.16
Bra001608.1-P	Field mustard	plastid	63.83	66.91
PGSC0003DMT400073694	Potato	plastid	65.6	66.79
CDX97709	Canola	plastid	63.12	66.67
CDX75847	Canola	plastid	63.48	66.54
CDY30115	Canola	plastid	62.77	66.29
Bra027204.1-P	Field mustard	plastid	62.77	66.29
Zm00001d033098_P001	Maize	plastid	54.26	57.3
GSMUA_Achr11P...	Banana	plastid	57.8	56.99
Os03t0586500-01	Rice	plastid	53.9	56.09
Zm00001d013781_P001	Maize	plastid	53.19	55.76
TraesCS7B01G289200.1	Wheat	plastid	52.84	55.6
TraesCS7D01G382900.1	Wheat	plastid	52.84	55.6
EER93872	Sorghum	plastid	51.77	54.89
TraesCS7A01G386300.1	Wheat	plastid	52.48	54.81

Protein Annotations

EntrezGene:100264489	wikigene:100264489	MapMan:35.2	ProteinID:CBI36334	ProteinID:CBI36334.3	UniProt:D7U138
EMBL:FN596494	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009987	GO:GO:0010478	EntrezGene:PIFI	wikigene:PIFI	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9
TIGR:TC54502	TIGR:TC55630	TIGR:TC62167	UniParc:UPI0001984000	ArrayExpress:VIT_09s0002g06980	EnsemblPlantsGene:VIT_09s0002g06980
EnsemblPlants:VIT_09s0002g06980.t01	unigene:Vvi.1359	RefSeq:XP_002266165	RefSeq:XP_002266165.1	RefSeq:XP_002266207	RefSeq:XP_002266207.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:6879497..6883661

Molecular Weight (calculated)

30380.4 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.190

Length

282 amino acids

Sequence
(BLAST)

001: MAATTGSIFA SSTQRFPTVT SVSGTNGSPS VAGRLASNFM GASLRSRLPK MGKVVKVTGK VSAAAVATTP VEETKEVKLP SWAMFELGRA PVYWKTMNGL
101: PPSSGEKLKL FYNPVASKLV PNEDFGIGFN GGFNQPIMCG GEPRAMLKKA RGKADRPIYT IQICIPKHAV NLIFSFTNGT EWDGPYKLQF QVPKAWRNKP
201: IEFFNQGLAE ELSKEGACDK AIFPDTNIVI DRCALIGNLT LEGGDRCNLD FVIGCTDPSS PLYNPLANVD DGSCPIESDS ED

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.