Factsheet for Solyc12g042770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075390.2.1
Solyc10g080130.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	Solyc06g075390.2.1	AT1G60080.1	21798944
AT3G15840.1	Solyc10g080130.1.1	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073694	Potato	plastid	92.78	92.78
VIT_09s0002g06980.t01	Wine grape	plastid	68.59	67.38
CDY58466	Canola	plastid	63.18	65.06
Bra001608.1-P	Field mustard	plastid	62.82	64.68
CDX75847	Canola	plastid	62.45	64.31
CDX97709	Canola	plastid	61.37	63.67
AT3G15840.1	Thale cress	plastid	61.37	63.43
Bra027204.1-P	Field mustard	plastid	61.01	63.3
CDY30115	Canola	plastid	61.01	63.3
KRH47439	Soybean	nucleus, plastid	60.29	61.4
KRH44469	Soybean	nucleus, plastid	59.57	59.57
GSMUA_Achr11P...	Banana	plastid	57.04	55.24
Zm00001d033098_P001	Maize	plastid	53.07	55.06
EER93872	Sorghum	plastid	52.71	54.89
Os03t0586500-01	Rice	plastid	53.07	54.24
Zm00001d013781_P001	Maize	plastid	52.35	53.9
TraesCS7A01G386300.1	Wheat	plastid	52.35	53.7
TraesCS7B01G289200.1	Wheat	plastid	51.26	52.99
TraesCS7D01G382900.1	Wheat	plastid	51.26	52.99

Protein Annotations

EnsemblPlants:Solyc12g042770.1.1	EnsemblPlantsGene:Solyc12g042770.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0010478	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9	UniParc:UPI0002769427
UniProt:K4DF66	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr12:+:39681468..39683912

Molecular Weight (calculated)

30266.9 Da

IEP (calculated)

5.097

GRAVY (calculated)

-0.220

Length

277 amino acids

Sequence
(BLAST)

001: MAAASTSPSL FPATRSASNT NTSPSVSNIY ATSFMGAHLR TYYPATRKLV RIHRGIVAAA VATSPAEEIK EYVLPSWAKF DLGISPVYWK TMNGLPPTAG
101: ERLKLFYNPA ASNMVPNEDF GIAFNGGFNQ PIMCGGEPRI MLEKIRGKAD PPIYTIQLCI PKHALSLIFS FTNGIEWDGP YRLQFQVPKA WRNKPTEFFT
201: EGLTQELSQE GACDRAIFPD SSILITRCAM VGNLNVDGGD RCNLDLVPGC IDPDSPQYNP LANVDDGSCP PYSDSED

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.