Factsheet for Zm00001d013781_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d021033_P001
Zm00001d031643_P001
Zm00001d044450_P001
Zm00001d049854_P001
Zm00001d049855_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	Zm00001d021033_P001	AT1G60080.1	21798944
AT3G15840.1	Zm00001d031643_P001	AT1G60080.1	21798944
AT3G15840.1	Zm00001d044450_P001	AT1G60080.1	21798944
AT3G15840.1	Zm00001d049854_P001	AT1G60080.1	21798944
AT3G15840.1	Zm00001d049855_P002	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033098_P001	Maize	plastid	84.76	85.39
EER93872	Sorghum	plastid	82.9	83.83
Os03t0586500-01	Rice	plastid	71.38	70.85
TraesCS7D01G382900.1	Wheat	plastid	69.14	69.4
TraesCS7B01G289200.1	Wheat	plastid	69.14	69.4
TraesCS7A01G386300.1	Wheat	plastid	69.52	69.26
VIT_09s0002g06980.t01	Wine grape	plastid	55.76	53.19
GSMUA_Achr11P...	Banana	plastid	56.51	53.15
PGSC0003DMT400073694	Potato	plastid	54.65	53.07
CDX97709	Canola	plastid	52.42	52.81
CDY30115	Canola	plastid	52.42	52.81
Bra027204.1-P	Field mustard	plastid	52.04	52.43
Solyc12g042770.1.1	Tomato	nucleus, plastid	53.9	52.35
Bra001608.1-P	Field mustard	plastid	52.04	52.04
AT3G15840.1	Thale cress	plastid	51.67	51.87
CDY58466	Canola	plastid	51.67	51.67
KRH47439	Soybean	nucleus, plastid	52.04	51.47
CDX75847	Canola	plastid	51.3	51.3
KRH44469	Soybean	nucleus, plastid	52.79	51.26

Protein Annotations

EnsemblPlants:Zm00001d013781_P001	EnsemblPlants:Zm00001d013781_T001	EnsemblPlantsGene:Zm00001d013781	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9	ProteinID:AQK64359.1
SEG:seg	UniParc:UPI000221C487	UniProt:A0A1D6GM23	MapMan:35.2	:	:

Description

Chloroplast post-illumination chlorophyll fluorescence increase protein

Coordinates

chr5:-:19950789..19952787

Molecular Weight (calculated)

28672.7 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.276

Length

269 amino acids

Sequence
(BLAST)

001: MATLSSCSRL SSGTGAAAIR RQPKPTRAGV LFTSRRGSSA SVRTAAAAAT AAPAAVEQQN TGVSVSLPTW AEFELGRAPV YWKTSNGLPS SPGEGLTLFY
101: NPAASKMAPN DVFGVAFNGG FNQPIMCGGE PRQMTLQVRG KADPPIYTIR IRVPQHATSL IFSFTNGAEW DGPYTLKFRV PKPWQKKPLS FFNEGLADEL
201: NREGACDLAI YPDENIAITS CAMDGYLDEG GDRCKLDIVS GCTDPSSDMF DPLATVDDGS CPLESDSEE

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.