CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01293
KRH01295
KRH01298
KRH16280
KRH45053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	KRH01293	AT1G60080.1	21798944
AT3G15840.1	KRH01295	AT1G60080.1	21798944
AT3G15840.1	KRH01298	AT1G60080.1	21798944
AT3G15840.1	KRH16280	AT1G60080.1	21798944
AT3G15840.1	KRH45053	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47439	Soybean	nucleus, plastid	94.58	96.32
VIT_09s0002g06980.t01	Wine grape	plastid	70.4	69.15
Bra001608.1-P	Field mustard	plastid	62.45	64.31
CDY58466	Canola	plastid	62.45	64.31
CDX75847	Canola	plastid	62.45	64.31
CDX97709	Canola	plastid	61.37	63.67
CDY30115	Canola	plastid	61.37	63.67
AT3G15840.1	Thale cress	plastid	61.37	63.43
Bra027204.1-P	Field mustard	plastid	61.01	63.3
PGSC0003DMT400073694	Potato	plastid	60.65	60.65
Solyc12g042770.1.1	Tomato	nucleus, plastid	59.57	59.57
Os03t0586500-01	Rice	plastid	53.07	54.24
GSMUA_Achr11P...	Banana	plastid	55.96	54.2
EER93872	Sorghum	plastid	51.99	54.14
Zm00001d033098_P001	Maize	plastid	51.99	53.93
Zm00001d013781_P001	Maize	plastid	51.26	52.79
TraesCS7B01G289200.1	Wheat	plastid	49.82	51.49
TraesCS7D01G382900.1	Wheat	plastid	49.46	51.12
TraesCS7A01G386300.1	Wheat	plastid	49.46	50.74

Protein Annotations

EntrezGene:100790141	MapMan:35.2	EMBL:ACUP02004928	EMBL:BT095574	UniProt:C6TDB8	EnsemblPlantsGene:GLYMA_08G213000
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0010478
EnsemblPlants:KRH44469	ProteinID:KRH44469	ProteinID:KRH44469.1	ProteinID:KRH44470.1	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9
UniParc:UPI0001B15A9D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:17182980..17186359

Molecular Weight (calculated)

30319.1 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.226

Length

277 amino acids

Sequence
(BLAST)

001: MAATNASIFA SSTQSCLPVS PTISNTLVSP FLNVSSPRSY LVKKKHVKFS KHISAAAVAT TTTTEEIQEY KLPSWAKFEI GRAAVYWKTM NGLPPSSGEK
101: LKLFYNPAAT QLVPNEEFGI AFNGGFNQPI MCGGEPRAML RKYRGKADAP IYSIQICIPK HALNLIFSFT NGVDWDGPYR LQFQVPKALQ NKPIDFFNKG
201: LAEELSKEGA CEQAIFPDTN KVITKCAMIG NLSKEGGDRC DLNFVVGCTD PSSHLYNPLA NVDDGTCTIE LDSESEE

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.