CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
unclear 1
cytosol 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01293
KRH01295
KRH01298
KRH16280
KRH45053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15840.1	KRH01293	AT1G60080.1	21798944
AT3G15840.1	KRH01295	AT1G60080.1	21798944
AT3G15840.1	KRH01298	AT1G60080.1	21798944
AT3G15840.1	KRH16280	AT1G60080.1	21798944
AT3G15840.1	KRH45053	AT1G60080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44469	Soybean	nucleus, plastid	96.32	94.58
VIT_09s0002g06980.t01	Wine grape	plastid	70.59	68.09
Bra001608.1-P	Field mustard	plastid	63.6	64.31
CDY58466	Canola	plastid	63.6	64.31
CDX97709	Canola	plastid	62.87	64.04
CDY30115	Canola	plastid	62.87	64.04
CDX75847	Canola	plastid	63.24	63.94
AT3G15840.1	Thale cress	plastid	62.87	63.81
Bra027204.1-P	Field mustard	plastid	62.5	63.67
PGSC0003DMT400073694	Potato	plastid	62.5	61.37
Solyc12g042770.1.1	Tomato	nucleus, plastid	61.4	60.29
GSMUA_Achr11P...	Banana	plastid	56.25	53.5
EER93872	Sorghum	plastid	51.84	53.01
Zm00001d033098_P001	Maize	plastid	51.84	52.81
Os03t0586500-01	Rice	plastid	52.57	52.77
Zm00001d013781_P001	Maize	plastid	51.47	52.04
TraesCS7B01G289200.1	Wheat	plastid	50.37	51.12
TraesCS7D01G382900.1	Wheat	plastid	50.0	50.75
TraesCS7A01G386300.1	Wheat	plastid	49.63	50.0

Protein Annotations

EntrezGene:100818459	MapMan:35.2	EMBL:ACUP02004150	EnsemblPlantsGene:GLYMA_07G029900	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0010478	UniProt:I1KH06	EnsemblPlants:KRH47439
ProteinID:KRH47439	ProteinID:KRH47439.1	PANTHER:PTHR32429	PANTHER:PTHR32429:SF9	UniParc:UPI00023391BD	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:2383023..2386348

Molecular Weight (calculated)

29758.7 Da

IEP (calculated)

7.971

GRAVY (calculated)

-0.213

Length

272 amino acids

Sequence
(BLAST)

001: MAATNASIFA SSTQPCLPVP PTIPNTLATP FLNVSSPRSY LVKKKHVKFS KKISAAAVAT TTTTEEIQEY KLPSWAKFEI GRAAVYWKTM NGLPPTSGEK
101: LKLFYNPAAT QLVPNEEFGI AFNGGFNQPI MCGGEPRAML RKDRGKADAP IYSIQICIPK HALNLIFSFT NGVDWDGPYR LQFQVPKALQ NKPIDFFNKG
201: LAEELSKEGA CEQAIFPDTN KIITKCAMIG NLSKEGGDRC DLNFVLGCTD PSSHLYNPLA NVDDGTCTIE LD

Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)

001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE

Arabidopsis Description

PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.