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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
  • plasma membrane 1
  • golgi 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:golgi, nucleus, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:golgi, nucleus, plasma membrane, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra027816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G15840.1 Bra027816.1-P AT1G60080.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX97709 Canola plastid 99.63 99.63
CDY30115 Canola plastid 98.88 98.88
AT3G15840.1 Thale cress plastid 92.51 92.16
Bra001608.1-P Field mustard plastid 91.76 91.08
VIT_09s0002g06980.t01 Wine grape plastid 66.29 62.77
KRH47439 Soybean nucleus, plastid 63.67 62.5
PGSC0003DMT400073694 Potato plastid 64.79 62.45
KRH44469 Soybean nucleus, plastid 63.3 61.01
Solyc12g042770.1.1 Tomato nucleus, plastid 63.3 61.01
EER93872 Sorghum plastid 55.43 55.64
Zm00001d033098_P001 Maize plastid 54.68 54.68
Os03t0586500-01 Rice plastid 55.06 54.24
GSMUA_Achr11P... Banana plastid 57.68 53.85
TraesCS7B01G289200.1 Wheat plastid 53.93 53.73
TraesCS7D01G382900.1 Wheat plastid 53.93 53.73
TraesCS7A01G386300.1 Wheat plastid 52.81 52.22
Zm00001d013781_P001 Maize plastid 52.43 52.04
Protein Annotations
EnsemblPlants:Bra027204.1EnsemblPlants:Bra027204.1-PEnsemblPlantsGene:Bra027204PANTHER:PTHR32429PANTHER:PTHR32429:SF9UniParc:UPI0002547937
UniProt:M4EEJ2MapMan:35.2::::
Description
AT3G15840 (E=7e-148) PIFI | PIFI (post-illumination chlorophyll fluorescence increase)
Coordinates
chrA05:+:19687073..19688572
Molecular Weight (calculated)
29535.4 Da
IEP (calculated)
5.883
GRAVY (calculated)
-0.307
Length
267 amino acids
Sequence
(BLAST)
001: MAAAANTAVF VSPSQPLSSK RSFLYSSTVS PIQRRFPRRK LELQVKAVAT TLAPLEEIKE YKLPSWAMLE MGTAPVFWKT MNGLPPTAGE KLKLFYNPAA
101: TKLTPNEDYG VAFNGGFNQP IMCGGEPRAM LKKDRGKADS PIYTMQICIP KHAVNLIFSF TNGVDWDGPY RLQFQVPKRW QNKPIEFFNE GLAKELSQDG
201: ACERAIFPDS NIVATRCTMI ANLTVEGGDR CNLDLVPGCM DTNSEHFNPL ANVDDGSCPL ELSDSDE
Best Arabidopsis Sequence Match ( AT3G15840.1 )
(BLAST)
001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE
Arabidopsis Description
PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.