Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20089766
plastid: 22065420 plastid: 23198870 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013781_P001 | Maize | plastid | 85.39 | 84.76 |
| EER93872 | Sorghum | plastid | 84.27 | 84.59 |
| Os03t0586500-01 | Rice | plastid | 75.66 | 74.54 |
| TraesCS7A01G386300.1 | Wheat | plastid | 74.16 | 73.33 |
| TraesCS7D01G382900.1 | Wheat | plastid | 73.41 | 73.13 |
| TraesCS7B01G289200.1 | Wheat | plastid | 73.03 | 72.76 |
| CDX97709 | Canola | plastid | 55.06 | 55.06 |
| CDY30115 | Canola | plastid | 55.06 | 55.06 |
| Bra027204.1-P | Field mustard | plastid | 54.68 | 54.68 |
| VIT_09s0002g06980.t01 | Wine grape | plastid | 57.3 | 54.26 |
| PGSC0003DMT400073694 | Potato | plastid | 56.18 | 54.15 |
| Bra001608.1-P | Field mustard | plastid | 54.31 | 53.9 |
| GSMUA_Achr11P... | Banana | plastid | 57.68 | 53.85 |
| CDY58466 | Canola | plastid | 53.93 | 53.53 |
| CDX75847 | Canola | plastid | 53.93 | 53.53 |
| Solyc12g042770.1.1 | Tomato | nucleus, plastid | 55.06 | 53.07 |
| AT3G15840.1 | Thale cress | plastid | 53.18 | 52.99 |
| KRH44469 | Soybean | nucleus, plastid | 53.93 | 51.99 |
| KRH47439 | Soybean | nucleus, plastid | 52.81 | 51.84 |
Protein Annotations
| EMBL:BT039618 | EnsemblPlants:Zm00001d033098_P001 | EnsemblPlants:Zm00001d033098_T001 | EnsemblPlantsGene:Zm00001d033098 | EntrezGene:100272863 | PANTHER:PTHR32429 |
| PANTHER:PTHR32429:SF9 | ProteinID:ONM06737.1 | SEG:seg | UniParc:UPI00017B7E6A | UniProt:B4FR80 | MapMan:35.2 |
Description
post-illumination chlorophyll fluorescence increase
Coordinates
chr1:+:250179850..250181762
Molecular Weight (calculated)
28415.5 Da
IEP (calculated)
4.557
GRAVY (calculated)
-0.194
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLSSCSRL SSGTGAAAIH RQPARAGAVL VVTCRRSSSA TVRAAAAATA AAPAAVELQN KGVSLPTWAE FELGRAPVYW KTSSGLPPSP GEGLTLFYNP
101: AATKMAPNEV FGVAFNGGFN QPIMCGGEPR QMTLQERGKA DPPIYTIRIR VPQHAVSLIF SFTNGAEWDG PYTLKFRVPK PWQNKPLSFF NEGLADELNR
201: EGACDLAIYP DENIAITSCA MDGYLEEGGD RCKLDIVSGC TDPSSDMFDP LATVDDGSCP LESDSEE
101: AATKMAPNEV FGVAFNGGFN QPIMCGGEPR QMTLQERGKA DPPIYTIRIR VPQHAVSLIF SFTNGAEWDG PYTLKFRVPK PWQNKPLSFF NEGLADELNR
201: EGACDLAIYP DENIAITSCA MDGYLEEGGD RCKLDIVSGC TDPSSDMFDP LATVDDGSCP LESDSEE
001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE
Arabidopsis Description
PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.