Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- golgi 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027816.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15840.1 | Bra027816.1-P | AT1G60080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58466 | Canola | plastid | 98.88 | 98.88 |
| CDX75847 | Canola | plastid | 98.14 | 98.14 |
| Bra027204.1-P | Field mustard | plastid | 91.08 | 91.76 |
| AT3G15840.1 | Thale cress | plastid | 91.08 | 91.42 |
| PGSC0003DMT400073694 | Potato | plastid | 65.8 | 63.9 |
| VIT_09s0002g06980.t01 | Wine grape | plastid | 66.91 | 63.83 |
| KRH47439 | Soybean | nucleus, plastid | 64.31 | 63.6 |
| Solyc12g042770.1.1 | Tomato | nucleus, plastid | 64.68 | 62.82 |
| KRH44469 | Soybean | nucleus, plastid | 64.31 | 62.45 |
| Os03t0586500-01 | Rice | plastid | 55.39 | 54.98 |
| EER93872 | Sorghum | plastid | 54.28 | 54.89 |
| Zm00001d033098_P001 | Maize | plastid | 53.9 | 54.31 |
| TraesCS7B01G289200.1 | Wheat | plastid | 53.16 | 53.36 |
| TraesCS7D01G382900.1 | Wheat | plastid | 53.16 | 53.36 |
| GSMUA_Achr11P... | Banana | plastid | 55.76 | 52.45 |
| TraesCS7A01G386300.1 | Wheat | plastid | 52.42 | 52.22 |
| Zm00001d013781_P001 | Maize | plastid | 52.04 | 52.04 |
Protein Annotations
Description
AT3G15840 (E=1e-132) PIFI | PIFI (post-illumination chlorophyll fluorescence increase)
Coordinates
chrA03:-:17374205..17375798
Molecular Weight (calculated)
29680.5 Da
IEP (calculated)
4.979
GRAVY (calculated)
-0.296
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAANTAAI FASPLKPLSS KSSLLYSSTI SPLQRRYPTR KLDLQVIKAV ATTLAPLEEI KEYKLPSWAM FEMGKAPVYW KTMNGLPPTA GEKLKLFYNP
101: AATELTPNED YGVAFNGGFN QPIMCGGEPR AMLKKDRGKA DSPIYTMQIC IPKHAVNLIF SFTNGVDWDG PYRLQFQVPK RWQNKPIEFF NEGLANELNQ
201: DGACERAIFP DSNIVATRCT MIANLTVEGG DRCNLDLVPG CMDTNSEHFN PLANVDDGSC PLELSDSDE
101: AATELTPNED YGVAFNGGFN QPIMCGGEPR AMLKKDRGKA DSPIYTMQIC IPKHAVNLIF SFTNGVDWDG PYRLQFQVPK RWQNKPIEFF NEGLANELNQ
201: DGACERAIFP DSNIVATRCT MIANLTVEGG DRCNLDLVPG CMDTNSEHFN PLANVDDGSC PLELSDSDE
001: MAAAANTSAV FASPSQPLSS KRSFLYSSRI GPILRRFPRK KLDLQVKAVA TTLAPLEEIK EYKLPSWAMF EMGTAPVYWK TMNGLPPTSG EKLKLFYNPA
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE
101: ASKLTLNEDY GVAFNGGFNQ PIMCGGEPRA MLKKDRGKAD SPIYTMQICI PKHAVNLIFS FTNGVDWDGP YRLQFQVPKR WQNKPIEFFN EGLANELSQD
201: GACERAIFPD SNVVPTRCTM IANLTVEGGD RCNLDLVPGC MDTNSEHFNP YANVDDGSCP LELSDSDE
Arabidopsis Description
PIFIPost-illumination chlorophyll fluorescence increase [Source:UniProtKB/TrEMBL;Acc:Q9LVZ5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.