CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22283
KRH27047
KRH41360
KRH60081

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	KRH22283	AT3G58630.1	21798944
AT3G24860.1	KRH27047	AT3G58630.1	21798944
AT3G24860.1	KRH41360	AT4G10840.1	21798944
AT3G24860.1	KRH60081	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07500	Soybean	cytosol, mitochondrion, nucleus	71.43	75.19
VIT_07s0005g06670.t01	Wine grape	nucleus	46.07	45.74
PGSC0003DMT400051788	Potato	nucleus	45.0	38.65
Solyc06g083430.1.1	Tomato	nucleus	44.29	38.15
GSMUA_Achr6P04170_001	Banana	nucleus	36.43	37.64
KRH50980	Soybean	nucleus	13.93	32.77
Bra015090.1-P	Field mustard	nucleus	32.14	30.3
CDX77381	Canola	nucleus	32.14	30.3
CDY52087	Canola	nucleus, plastid	31.79	29.97
CDY39785	Canola	nucleus	28.57	28.78
Zm00001d052798_P001	Maize	nucleus	30.0	28.77
KRH41794	Soybean	nucleus	32.14	27.69
Os08t0484700-01	Rice	nucleus	30.71	27.3
Zm00001d031266_P001	Maize	nucleus	30.71	26.96
AT3G24860.1	Thale cress	nucleus	29.29	26.45
KRH40215	Soybean	nucleus	30.36	26.4
EES15479	Sorghum	nucleus	29.29	25.95
TraesCS5B01G564200.1	Wheat	nucleus	27.14	24.68
TraesCS5D01G550500.1	Wheat	nucleus	26.43	24.34
KRH01003	Soybean	nucleus	22.14	22.96
TraesCS4A01G315300.1	Wheat	nucleus	24.64	22.4
KRH20709	Soybean	nucleus	20.36	17.48
KRH30077	Soybean	nucleus	21.07	17.3
KRH13365	Soybean	nucleus	20.0	16.77
KRH62829	Soybean	nucleus	20.71	15.93

Protein Annotations

EMBL:ACUP02001888	EnsemblPlants:KRH66081	EnsemblPlantsGene:GLYMA_03G081500	EntrezGene:100814846	InterPro:IPR017877	InterPro:Myb-like_dom
ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF17	PFAM:PF13837	PFscan:PS50090	ProteinID:KRH66081
ProteinID:KRH66081.1	ProteinID:KRH66082.1	ProteinID:KRH66083.1	ProteinID:KRH66084.1	SEG:seg	UniParc:UPI000233A651
UniProt:K7KDQ9	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:21975222..21979392

Molecular Weight (calculated)

32599.3 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.953

Length

280 amino acids

Sequence
(BLAST)

001: MATPPNDAAS TKKPQPIPWT HQETVHLIRA YQEKWYALKR GPLRHNQWEE VAVVVAARCG YDLAHPAKSA LQCRHKMEKL RQRHRAEKKQ QHSAADALRP
101: GAWQYNALMD DLERGPLPIS ALAPLYSDEE EDEDDDDAID DQYDNDGDEG FINIKSKSIN CILSERPVRM RSNDRGFLRE HVVVVEEEEE EEEEEEVEEE
201: EENENEDDDV LGLSMEMRVF AERFIGMESL KMEMMKETER CRLEMEKKRI QMILESQRRI VDSIGKAFGS SKRVKITQQN

Best Arabidopsis Sequence Match ( AT3G24860.1 )
(BLAST)

001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.