Factsheet for PGSC0003DMT400051788

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014982
PGSC0003DMT400020194
PGSC0003DMT400031631
PGSC0003DMT400052607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24860.1	PGSC0003DMT400020194	AT3G58630.1	21798944
AT3G24860.1	PGSC0003DMT400052607	AT3G58630.1	21798944
AT3G24860.1	PGSC0003DMT400014982	AT4G10840.1	21798944
AT3G24860.1	PGSC0003DMT400031631	AT4G10840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083430.1.1	Tomato	nucleus	92.02	92.31
VIT_07s0005g06670.t01	Wine grape	nucleus	45.09	52.13
KRH07500	Soybean	cytosol, mitochondrion, nucleus	38.04	46.62
KRH66081	Soybean	cytosol	38.65	45.0
GSMUA_Achr6P04170_001	Banana	nucleus	35.58	42.8
Bra015090.1-P	Field mustard	nucleus	28.83	31.65
CDX77381	Canola	nucleus	28.83	31.65
CDY52087	Canola	nucleus, plastid	28.53	31.31
Os08t0484700-01	Rice	nucleus	30.06	31.11
Zm00001d031266_P001	Maize	nucleus	30.06	30.72
EES15479	Sorghum	nucleus	29.75	30.7
AT3G24860.1	Thale cress	nucleus	28.83	30.32
CDY39785	Canola	nucleus	25.77	30.22
Zm00001d052798_P001	Maize	nucleus	26.38	29.45
PGSC0003DMT400004269	Potato	plastid	28.53	28.27
TraesCS5D01G550500.1	Wheat	nucleus	25.46	27.3
TraesCS5B01G564200.1	Wheat	nucleus	25.46	26.95
TraesCS4A01G315300.1	Wheat	nucleus	24.85	26.3
PGSC0003DMT400052836	Potato	nucleus	27.91	21.98
PGSC0003DMT400013829	Potato	nucleus	18.4	17.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400051788	EnsemblPlantsGene:PGSC0003DMG400020098	EntrezGene:102598294	Gene3D:1.10.10.60	InterPro:IPR006578	InterPro:IPR017877
InterPro:MADF-dom	InterPro:Myb-like_dom	PANTHER:PTHR31307	PANTHER:PTHR31307:SF17	PFAM:PF13837	PFscan:PS50090
PGSC:PGSC0003DMG400020098	RefSeq:XP_006352691.1	SEG:seg	SMART:SM00595	UniParc:UPI00029592FF	UniProt:M1BS75
MapMan:15.5.20	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020098]

Coordinates

chr6:-:58346537..58348145

Molecular Weight (calculated)

37862.0 Da

IEP (calculated)

6.285

GRAVY (calculated)

-0.946

Length

326 amino acids

Sequence
(BLAST)

001: MATPSSPPPL LLPPPESNQP QISPNPLIPS PQKKTQPIPW THQETFNLIQ AYQEKWYSLK KGQLKASQWE EVAITVAARC GFDEPSKSAT QCRHKIEKLR
101: KRYRAERLKP YPNSWQYFDL MDRMERGPLP IAAHPVAMVK CQNSNSTSDQ RYYDTDSDEV DVSFMDLRKN KCKSINHIVR GEMGMMGVNV VADNRNMNRM
201: VKDRNFDPMR GMRNTMNEKR KGYFENVGIN NDDDDNVEEE VDEEEDDEDG EGSVGGSELA AEIRGFAERF MRMESKKIEM MKETERFRME MEKRRMEMIL
301: ETQRNLIDTI NSVVGSHKKV KVAHEF

Best Arabidopsis Sequence Match ( AT3G24860.1 )
(BLAST)

001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA
101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR
201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL
301: QFINNAFDSF

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.