Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0565000-01 | |
| Os04t0445600-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42300.1 | Os02t0565000-01 | AT1G54060.1 | 21798944 |
| AT5G42300.1 | Os04t0445600-00 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07961 | Sorghum | cytosol | 87.95 | 100.0 |
| EES16514 | Sorghum | cytosol | 87.95 | 100.0 |
| GSMUA_Achr4P21840_001 | Banana | cytosol | 54.22 | 100.0 |
| Zm00001d004936_P002 | Maize | cytosol | 87.95 | 100.0 |
| Bra023834.1-P | Field mustard | cytosol | 86.75 | 98.63 |
| CDY34256 | Canola | cytosol | 86.75 | 98.63 |
| CDY46327 | Canola | cytosol | 86.75 | 98.63 |
| AT3G45180.1 | Thale cress | cytosol | 85.54 | 97.26 |
| AT5G42300.1 | Thale cress | cytosol | 85.54 | 97.26 |
| KRH11137 | Soybean | cytosol | 83.13 | 94.52 |
| KRH21110 | Soybean | cytosol | 83.13 | 94.52 |
| VIT_19s0090g00430.t01 | Wine grape | cytosol | 83.13 | 94.52 |
| Os12t0143100-01 | Rice | cytosol | 90.36 | 82.42 |
| Os02t0628800-01 | Rice | cytosol | 84.34 | 64.22 |
Protein Annotations
| EnsemblPlants:Os11t0145400-01 | EnsemblPlantsGene:Os11g0145400 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR13042 | PANTHER:PTHR13042:SF4 | PFAM:PF00240 |
| PFscan:PS50053 | ProteinID:BAT12654.1 | SUPFAM:SSF54236 | UniParc:UPI000393AE37 | UniProt:A0A0P0XYN0 | MapMan:19.2.2.4.1 |
Description
Similar to GRF zinc finger family protein. (Os11t0145400-01)
Coordinates
chr11:+:2074609..2077162
Molecular Weight (calculated)
9712.8 Da
IEP (calculated)
7.410
GRAVY (calculated)
-0.686
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: GLCDLREEGK MIEVVLNDRL GKKVRVKCNE DDTIGDLKKL VAAQTGTRPE KIRIQKWYNI YKDHITLKDY EIHDGMGLEL YYN
1: MIEVVLNDRL GKKVRVKCNE EDTIGDLKKL VAAQTGTRPE KIRIQKWYNI YKDHIPLKDY EIHDGMGLEL YYN
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M1U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.